JWS-117 Compiled all tools with ./compilebin.sh and some were missing related files.

[jabaws.git] / binaries / src / ViennaRNA / doc / latex / LPfold_8h_source.tex

diff --git a/binaries/src/ViennaRNA/doc/latex/LPfold_8h_source.tex b/binaries/src/ViennaRNA/doc/latex/LPfold_8h_source.tex
index f7243fb..cacae02 100644 (file)
--- a/binaries/src/ViennaRNA/doc/latex/LPfold_8h_source.tex
+++ b/binaries/src/ViennaRNA/doc/latex/LPfold_8h_source.tex
@@ -1,12 +1,13 @@
-\hypertarget{LPfold_8h}{\section{L\-Pfold.\-h}
-\label{LPfold_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/\-L\-Pfold.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/\-L\-Pfold.\-h}}
+\hypertarget{LPfold_8h_source}{
+\section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/LPfold.h}
 }
 
-\begin{DoxyCode}
+
+\begin{footnotesize}\begin{alltt}
 00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_LPFOLD\_H\_\_}
 00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_LPFOLD\_H\_\_}
 00003 \textcolor{preprocessor}{}
-00004 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data\_structures.h}"}
+00004 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data_structures.h}"}
 00005 
 00006 \textcolor{preprocessor}{#ifdef \_\_GNUC\_\_}
 00007 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define DEPRECATED(func) func \_\_attribute\_\_ ((deprecated))}
@@ -14,11 +15,11 @@
 00009 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define DEPRECATED(func) func}
 00010 \textcolor{preprocessor}{}\textcolor{preprocessor}{#endif}
 00011 \textcolor{preprocessor}{}
-00029 \textcolor{keywordtype}{void} \hyperlink{group__local__pf__fold_ga5a019014d37fe6105131dfc2fc447880}{update\_pf\_paramsLP}(\textcolor{keywordtype}{int} length);
+00029 \textcolor{keywordtype}{void} \hyperlink{group__local__pf__fold_ga5a019014d37fe6105131dfc2fc447880}{update_pf_paramsLP}(\textcolor{keywordtype}{int} length);
 00030 
-00037 \textcolor{keywordtype}{void} update\_pf\_paramsLP\_par(\textcolor{keywordtype}{int} length, \hyperlink{structpf__paramT}{pf\_paramT} *parameters);
+00037 \textcolor{keywordtype}{void} update\_pf\_paramsLP\_par(\textcolor{keywordtype}{int} length, \hyperlink{structpf__paramT}{pf_paramT} *parameters);
 00038 
-00076 \hyperlink{structplist}{plist} *\hyperlink{group__local__pf__fold_gaa1ecd401617ebc748a0220026543c777}{pfl\_fold}(\textcolor{keywordtype}{char} *sequence,
+00076 \hyperlink{structplist}{plist} *\hyperlink{group__local__pf__fold_gaa1ecd401617ebc748a0220026543c777}{pfl_fold}(\textcolor{keywordtype}{char} *sequence,
 00077                 \textcolor{keywordtype}{int} winSize,
 00078                 \textcolor{keywordtype}{int} pairSize,
 00079                 \textcolor{keywordtype}{float} cutoffb,
@@ -27,7 +28,7 @@
 00082                 FILE *pUfp,
 00083                 FILE *spup);
 00084 
-00091 \hyperlink{structplist}{plist} *\hyperlink{group__local__pf__fold_gab354507e8028f3e1c52ef96bb1eb9df8}{pfl\_fold\_par}(\textcolor{keywordtype}{char} *sequence,
+00091 \hyperlink{structplist}{plist} *\hyperlink{group__local__pf__fold_gab354507e8028f3e1c52ef96bb1eb9df8}{pfl_fold_par}(\textcolor{keywordtype}{char} *sequence,
 00092                     \textcolor{keywordtype}{int} winSize,
 00093                     \textcolor{keywordtype}{int} pairSize,
 00094                     \textcolor{keywordtype}{float} cutoffb,
@@ -35,7 +36,7 @@
 00096                     \textcolor{keyword}{struct} \hyperlink{structplist}{plist} **dpp2,
 00097                     FILE *pUfp,
 00098                     FILE *spup,
-00099                     \hyperlink{structpf__paramT}{pf\_paramT} *parameters);
+00099                     \hyperlink{structpf__paramT}{pf_paramT} *parameters);
 00100 
 00101 
 00102 \textcolor{keywordtype}{void} putoutpU\_prob\_par( \textcolor{keywordtype}{double} **pU,
@@ -43,10 +44,10 @@
 00104                         \textcolor{keywordtype}{int} ulength,
 00105                         FILE *fp,
 00106                         \textcolor{keywordtype}{int} energies,
-00107                         \hyperlink{structpf__paramT}{pf\_paramT} *parameters);
+00107                         \hyperlink{structpf__paramT}{pf_paramT} *parameters);
 00108 
 00109 
-00124 \textcolor{keywordtype}{void}    \hyperlink{group__local__pf__fold_ga0bcb751860bbf34e3dfee8c2fbdb3ef3}{putoutpU\_prob}(\textcolor{keywordtype}{double} **pU,
+00124 \textcolor{keywordtype}{void}    \hyperlink{group__local__pf__fold_ga0bcb751860bbf34e3dfee8c2fbdb3ef3}{putoutpU_prob}(\textcolor{keywordtype}{double} **pU,
 00125                       \textcolor{keywordtype}{int} length,
 00126                       \textcolor{keywordtype}{int} ulength,
 00127                       FILE *fp,
@@ -57,15 +58,15 @@
 00132                             \textcolor{keywordtype}{int} ulength,
 00133                             FILE *fp,
 00134                             \textcolor{keywordtype}{int} energies,
-00135                             \hyperlink{structpf__paramT}{pf\_paramT} *parameters);
+00135                             \hyperlink{structpf__paramT}{pf_paramT} *parameters);
 00136 
-00151 \textcolor{keywordtype}{void}    \hyperlink{group__local__pf__fold_ga9acb00ee10e96b1ca4ea394cd8bcec75}{putoutpU\_prob\_bin}(\textcolor{keywordtype}{double} **pU,
+00151 \textcolor{keywordtype}{void}    \hyperlink{group__local__pf__fold_ga9acb00ee10e96b1ca4ea394cd8bcec75}{putoutpU_prob_bin}(\textcolor{keywordtype}{double} **pU,
 00152                           \textcolor{keywordtype}{int} length,
 00153                           \textcolor{keywordtype}{int} ulength,
 00154                           FILE *fp,
 00155                           \textcolor{keywordtype}{int} energies);
 00156 
-00162 DEPRECATED(\textcolor{keywordtype}{void} \hyperlink{LPfold_8h_ae85bf55053e9fb295208be322e0fa07a}{init\_pf\_foldLP}(\textcolor{keywordtype}{int} length));
+00162 DEPRECATED(\textcolor{keywordtype}{void} \hyperlink{LPfold_8h_ae85bf55053e9fb295208be322e0fa07a}{init_pf_foldLP}(\textcolor{keywordtype}{int} length));
 00163 
 00164 \textcolor{preprocessor}{#endif}
-\end{DoxyCode}
+\end{alltt}\end{footnotesize}