Add missing doc files

[jabaws.git] / binaries / src / ViennaRNA / doc / latex / ProfileAln_8h_source.tex

diff --git a/binaries/src/ViennaRNA/doc/latex/ProfileAln_8h_source.tex b/binaries/src/ViennaRNA/doc/latex/ProfileAln_8h_source.tex
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+\hypertarget{ProfileAln_8h}{\section{Profile\-Aln.\-h}
+\label{ProfileAln_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/\-Profile\-Aln.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/\-Profile\-Aln.\-h}}
+}
+
+\begin{DoxyCode}
+00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_PROFILEALN\_H\_\_}
+00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_PROFILEALN\_H\_\_}
+00003 \textcolor{preprocessor}{}
+00004 \textcolor{keywordtype}{float} profile\_aln(\textcolor{keyword}{const} \textcolor{keywordtype}{float} *T1,
+00005                   \textcolor{keyword}{const} \textcolor{keywordtype}{char} *seq1,
+00006                   \textcolor{keyword}{const} \textcolor{keywordtype}{float} *T2,
+00007                   \textcolor{keyword}{const} \textcolor{keywordtype}{char} *seq2);
+00008 
+00009 \textcolor{keywordtype}{int} set\_paln\_params(\textcolor{keywordtype}{double} gap\_open,
+00010                     \textcolor{keywordtype}{double} gap\_ext,
+00011                     \textcolor{keywordtype}{double} seqweight,
+00012                     \textcolor{keywordtype}{int} free\_ends);
+00013 
+00014 \textcolor{preprocessor}{#endif}
+\end{DoxyCode}