Add missing doc files

[jabaws.git] / binaries / src / ViennaRNA / doc / latex / convert__epars_8h_source.tex

diff --git a/binaries/src/ViennaRNA/doc/latex/convert__epars_8h_source.tex b/binaries/src/ViennaRNA/doc/latex/convert__epars_8h_source.tex
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+\hypertarget{convert__epars_8h}{\section{convert\-\_\-epars.\-h}
+\label{convert__epars_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/convert\-\_\-epars.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/convert\-\_\-epars.\-h}}
+}
+
+\begin{DoxyCode}
+00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_CONVERT\_EPARS\_H\_\_}
+00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_CONVERT\_EPARS\_H\_\_}
+00003 \textcolor{preprocessor}{}
+\hypertarget{convert__epars_8h_source_l00018}{}\hyperlink{group__energy__parameters__convert_ga8dc6aee5a806c49b71557152f9616bc4}{00018} \textcolor{preprocessor}{#define VRNA\_CONVERT\_OUTPUT\_ALL           1U}
+00019 \textcolor{preprocessor}{}
+\hypertarget{convert__epars_8h_source_l00020}{}\hyperlink{group__energy__parameters__convert_gaf66fe2cb11dfcfd32d791049c254a8a4}{00020} \textcolor{preprocessor}{#define VRNA\_CONVERT\_OUTPUT\_HP            2U}
+00021 \textcolor{preprocessor}{}
+\hypertarget{convert__epars_8h_source_l00022}{}\hyperlink{group__energy__parameters__convert_gad23522d63f8d4c50d5a5deee9bee3ef2}{00022} \textcolor{preprocessor}{#define VRNA\_CONVERT\_OUTPUT\_STACK         4U}
+00023 \textcolor{preprocessor}{}
+\hypertarget{convert__epars_8h_source_l00024}{}\hyperlink{group__energy__parameters__convert_gaa892c7b4957459090f3e08da298cc347}{00024} \textcolor{preprocessor}{#define VRNA\_CONVERT\_OUTPUT\_MM\_HP         8U}
+00025 \textcolor{preprocessor}{}
+\hypertarget{convert__epars_8h_source_l00026}{}\hyperlink{group__energy__parameters__convert_ga4ff223fb1f9c62cd92d9ab811ad03d55}{00026} \textcolor{preprocessor}{#define VRNA\_CONVERT\_OUTPUT\_MM\_INT        16U}
+00027 \textcolor{preprocessor}{}
+\hypertarget{convert__epars_8h_source_l00028}{}\hyperlink{group__energy__parameters__convert_gaf5d3743219f83c6348155cd81e755bbb}{00028} \textcolor{preprocessor}{#define VRNA\_CONVERT\_OUTPUT\_MM\_INT\_1N     32U}
+00029 \textcolor{preprocessor}{}
+\hypertarget{convert__epars_8h_source_l00030}{}\hyperlink{group__energy__parameters__convert_ga78382ec622ba99e0ac2262317bdd7316}{00030} \textcolor{preprocessor}{#define VRNA\_CONVERT\_OUTPUT\_MM\_INT\_23     64U}
+00031 \textcolor{preprocessor}{}
+\hypertarget{convert__epars_8h_source_l00032}{}\hyperlink{group__energy__parameters__convert_gae67af9f1cdf7baf2865481282a5d1034}{00032} \textcolor{preprocessor}{#define VRNA\_CONVERT\_OUTPUT\_MM\_MULTI      128U}
+00033 \textcolor{preprocessor}{}
+\hypertarget{convert__epars_8h_source_l00034}{}\hyperlink{group__energy__parameters__convert_gaf14ead7ef1fdbe725ade653750fc51e3}{00034} \textcolor{preprocessor}{#define VRNA\_CONVERT\_OUTPUT\_MM\_EXT        256U}
+00035 \textcolor{preprocessor}{}
+\hypertarget{convert__epars_8h_source_l00036}{}\hyperlink{group__energy__parameters__convert_ga036ffd996d8c8a9acf631760dd1da24b}{00036} \textcolor{preprocessor}{#define VRNA\_CONVERT\_OUTPUT\_DANGLE5       512U}
+00037 \textcolor{preprocessor}{}
+\hypertarget{convert__epars_8h_source_l00038}{}\hyperlink{group__energy__parameters__convert_ga34a8a5479ef885834ef32f3fb43d79bc}{00038} \textcolor{preprocessor}{#define VRNA\_CONVERT\_OUTPUT\_DANGLE3       1024U}
+00039 \textcolor{preprocessor}{}
+\hypertarget{convert__epars_8h_source_l00040}{}\hyperlink{group__energy__parameters__convert_ga079aafefd5f8ab57ee5120099a34bd25}{00040} \textcolor{preprocessor}{#define VRNA\_CONVERT\_OUTPUT\_INT\_11        2048U}
+00041 \textcolor{preprocessor}{}
+\hypertarget{convert__epars_8h_source_l00042}{}\hyperlink{group__energy__parameters__convert_gacf770881d9034431ebe741642342a1f9}{00042} \textcolor{preprocessor}{#define VRNA\_CONVERT\_OUTPUT\_INT\_21        4096U}
+00043 \textcolor{preprocessor}{}
+\hypertarget{convert__epars_8h_source_l00044}{}\hyperlink{group__energy__parameters__convert_gaa307671e2631cdacad9cbe4c6583b05f}{00044} \textcolor{preprocessor}{#define VRNA\_CONVERT\_OUTPUT\_INT\_22        8192U}
+00045 \textcolor{preprocessor}{}
+\hypertarget{convert__epars_8h_source_l00046}{}\hyperlink{group__energy__parameters__convert_ga7092fe0be4de6f02cc0bf08e81af726a}{00046} \textcolor{preprocessor}{#define VRNA\_CONVERT\_OUTPUT\_BULGE         16384U}
+00047 \textcolor{preprocessor}{}
+\hypertarget{convert__epars_8h_source_l00048}{}\hyperlink{group__energy__parameters__convert_gac5c2289fdf8ff1b980976d1613ff943a}{00048} \textcolor{preprocessor}{#define VRNA\_CONVERT\_OUTPUT\_INT           32768U}
+00049 \textcolor{preprocessor}{}
+\hypertarget{convert__epars_8h_source_l00050}{}\hyperlink{group__energy__parameters__convert_gaf2c8755d64eff3852aa45df9ac80a4fe}{00050} \textcolor{preprocessor}{#define VRNA\_CONVERT\_OUTPUT\_ML            65536U}
+00051 \textcolor{preprocessor}{}
+\hypertarget{convert__epars_8h_source_l00052}{}\hyperlink{group__energy__parameters__convert_ga46d5b1535ae86060b6317565b7c6b40b}{00052} \textcolor{preprocessor}{#define VRNA\_CONVERT\_OUTPUT\_MISC          131072U}
+00053 \textcolor{preprocessor}{}
+\hypertarget{convert__epars_8h_source_l00054}{}\hyperlink{group__energy__parameters__convert_gaa1ff48a79642d69579d1766561ec6db6}{00054} \textcolor{preprocessor}{#define VRNA\_CONVERT\_OUTPUT\_SPECIAL\_HP    262144U}
+00055 \textcolor{preprocessor}{}
+\hypertarget{convert__epars_8h_source_l00056}{}\hyperlink{group__energy__parameters__convert_ga0d4e8a836bb4864ab5129c085dbf592d}{00056} \textcolor{preprocessor}{#define VRNA\_CONVERT\_OUTPUT\_VANILLA       524288U}
+00057 \textcolor{preprocessor}{}
+\hypertarget{convert__epars_8h_source_l00058}{}\hyperlink{group__energy__parameters__convert_ga2eb0462f16939ddacdaf751a88d675ce}{00058} \textcolor{preprocessor}{#define VRNA\_CONVERT\_OUTPUT\_NINIO         1048576U}
+00059 \textcolor{preprocessor}{}
+\hypertarget{convert__epars_8h_source_l00060}{}\hyperlink{group__energy__parameters__convert_gac86976e9c2a55b3a6481ea60044f6098}{00060} \textcolor{preprocessor}{#define VRNA\_CONVERT\_OUTPUT\_DUMP          2097152U}
+00061 \textcolor{preprocessor}{}
+00084 \textcolor{keywordtype}{void} \hyperlink{group__energy__parameters__convert_gafbe538bc4eb2cf2a33326e1010005f8a}{convert\_parameter\_file}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *iname,
+00085                             \textcolor{keyword}{const} \textcolor{keywordtype}{char} *oname,
+00086                             \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} options);
+00087 
+00091 \textcolor{preprocessor}{#endif}
+\end{DoxyCode}