--- /dev/null
+\hypertarget{data__structures_8h}{\section{/home/asherstnev/\-Projects/\-Java.projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/data\-\_\-structures.h File Reference}
+\label{data__structures_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/data\-\_\-structures.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/data\-\_\-structures.\-h}}
+}
+
+
+All datastructures and typedefs shared among the Vienna R\-N\-A Package can be found here.
+
+
+Include dependency graph for data\-\_\-structures.\-h\-:
+\nopagebreak
+\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[width=250pt]{data__structures_8h__incl}
+\end{center}
+\end{figure}
+This graph shows which files directly or indirectly include this file\-:
+\nopagebreak
+\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[width=350pt]{data__structures_8h__dep__incl}
+\end{center}
+\end{figure}
+\subsection*{Data Structures}
+\begin{DoxyCompactItemize}
+\item
+struct \hyperlink{structplist}{plist}
+\begin{DoxyCompactList}\small\item\em this datastructure is used as input parameter in functions of \hyperlink{PS__dot_8h}{P\-S\-\_\-dot.\-h} and others \end{DoxyCompactList}\item
+struct \hyperlink{structcpair}{cpair}
+\begin{DoxyCompactList}\small\item\em this datastructure is used as input parameter in functions of P\-S\-\_\-dot.\-c \end{DoxyCompactList}\item
+struct \hyperlink{structCOORDINATE}{C\-O\-O\-R\-D\-I\-N\-A\-T\-E}
+\begin{DoxyCompactList}\small\item\em this is a workarround for the S\-W\-I\-G Perl Wrapper R\-N\-A plot function that returns an array of type \hyperlink{structCOORDINATE}{C\-O\-O\-R\-D\-I\-N\-A\-T\-E} \end{DoxyCompactList}\item
+struct \hyperlink{structsect}{sect}
+\begin{DoxyCompactList}\small\item\em Stack of partial structures for backtracking. \end{DoxyCompactList}\item
+struct \hyperlink{structbondT}{bond\-T}
+\begin{DoxyCompactList}\small\item\em Base pair. \end{DoxyCompactList}\item
+struct \hyperlink{structbondTEn}{bond\-T\-En}
+\begin{DoxyCompactList}\small\item\em Base pair with associated energy. \end{DoxyCompactList}\item
+struct \hyperlink{structmodel__detailsT}{model\-\_\-details\-T}
+\begin{DoxyCompactList}\small\item\em The data structure that contains the complete model details used throughout the calculations. \end{DoxyCompactList}\item
+struct \hyperlink{structparamT}{param\-T}
+\begin{DoxyCompactList}\small\item\em The datastructure that contains temperature scaled energy parameters. \end{DoxyCompactList}\item
+struct \hyperlink{structpf__paramT}{pf\-\_\-param\-T}
+\begin{DoxyCompactList}\small\item\em The datastructure that contains temperature scaled Boltzmann weights of the energy parameters. \end{DoxyCompactList}\item
+struct \hyperlink{structPAIR}{P\-A\-I\-R}
+\begin{DoxyCompactList}\small\item\em Base pair data structure used in subopt.\-c. \end{DoxyCompactList}\item
+struct \hyperlink{structINTERVAL}{I\-N\-T\-E\-R\-V\-A\-L}
+\begin{DoxyCompactList}\small\item\em Sequence interval stack element used in subopt.\-c. \end{DoxyCompactList}\item
+struct \hyperlink{structSOLUTION}{S\-O\-L\-U\-T\-I\-O\-N}
+\begin{DoxyCompactList}\small\item\em Solution element from subopt.\-c. \end{DoxyCompactList}\item
+struct \hyperlink{structcofoldF}{cofold\-F}
+\item
+struct \hyperlink{structConcEnt}{Conc\-Ent}
+\item
+struct \hyperlink{structpairpro}{pairpro}
+\item
+struct \hyperlink{structpair__info}{pair\-\_\-info}
+\begin{DoxyCompactList}\small\item\em A base pair info structure. \end{DoxyCompactList}\item
+struct \hyperlink{structmove__t}{move\-\_\-t}
+\item
+struct \hyperlink{structintermediate__t}{intermediate\-\_\-t}
+\item
+struct \hyperlink{structpath__t}{path\-\_\-t}
+\item
+struct \hyperlink{structpu__contrib}{pu\-\_\-contrib}
+\begin{DoxyCompactList}\small\item\em contributions to p\-\_\-u \end{DoxyCompactList}\item
+struct \hyperlink{structinteract}{interact}
+\item
+struct \hyperlink{structpu__out}{pu\-\_\-out}
+\begin{DoxyCompactList}\small\item\em Collection of all free\-\_\-energy of beeing unpaired values for output. \end{DoxyCompactList}\item
+struct \hyperlink{structconstrain}{constrain}
+\begin{DoxyCompactList}\small\item\em constraints for cofolding \end{DoxyCompactList}\item
+struct \hyperlink{structduplexT}{duplex\-T}
+\item
+struct \hyperlink{structfolden}{folden}
+\item
+struct \hyperlink{structsnoopT}{snoop\-T}
+\item
+struct \hyperlink{structdupVar}{dup\-Var}
+\item
+struct \hyperlink{structTwoDfold__solution}{Two\-Dfold\-\_\-solution}
+\begin{DoxyCompactList}\small\item\em Solution element returned from Two\-Dfold\-List. \end{DoxyCompactList}\item
+struct \hyperlink{structTwoDfold__vars}{Two\-Dfold\-\_\-vars}
+\begin{DoxyCompactList}\small\item\em Variables compound for 2\-Dfold M\-F\-E folding. \end{DoxyCompactList}\item
+struct \hyperlink{structTwoDpfold__solution}{Two\-Dpfold\-\_\-solution}
+\begin{DoxyCompactList}\small\item\em Solution element returned from Two\-Dpfold\-List. \end{DoxyCompactList}\item
+struct \hyperlink{structTwoDpfold__vars}{Two\-Dpfold\-\_\-vars}
+\begin{DoxyCompactList}\small\item\em Variables compound for 2\-Dfold partition function folding. \end{DoxyCompactList}\end{DoxyCompactItemize}
+\subsection*{Macros}
+\begin{DoxyCompactItemize}
+\item
+\hypertarget{data__structures_8h_a05a5ffe718aa431d97419a12fb082379}{\#define \hyperlink{data__structures_8h_a05a5ffe718aa431d97419a12fb082379}{M\-A\-X\-A\-L\-P\-H\-A}~20}\label{data__structures_8h_a05a5ffe718aa431d97419a12fb082379}
+
+\begin{DoxyCompactList}\small\item\em Maximal length of alphabet. \end{DoxyCompactList}\item
+\hypertarget{data__structures_8h_a5ec740b80afb4906ba4311dbd8ddbd89}{\#define \hyperlink{data__structures_8h_a5ec740b80afb4906ba4311dbd8ddbd89}{M\-A\-X\-D\-O\-S}~1000}\label{data__structures_8h_a5ec740b80afb4906ba4311dbd8ddbd89}
+
+\begin{DoxyCompactList}\small\item\em Maximum density of states discretization for subopt. \end{DoxyCompactList}\end{DoxyCompactItemize}
+
+
+\subsection{Detailed Description}
+All datastructures and typedefs shared among the Vienna R\-N\-A Package can be found here.
\ No newline at end of file
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