-\hypertarget{dist__vars_8h}{\section{/home/asherstnev/\-Projects/\-Java.projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/dist\-\_\-vars.h File Reference}
-\label{dist__vars_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/dist\-\_\-vars.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/dist\-\_\-vars.\-h}}
+\hypertarget{dist__vars_8h}{
+\section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/dist\_\-vars.h File Reference}
+\label{dist__vars_8h}\index{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/dist\_\-vars.h@{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/dist\_\-vars.h}}
}
-Global variables for Distance-\/\-Package.
-
-
-This graph shows which files directly or indirectly include this file\-:
-\nopagebreak
+Global variables for Distance-\/Package.
+This graph shows which files directly or indirectly include this file:\nopagebreak
\begin{figure}[H]
\begin{center}
\leavevmode
-\includegraphics[width=350pt]{dist__vars_8h__dep__incl}
+\includegraphics[width=413pt]{dist__vars_8h__dep__incl}
\end{center}
\end{figure}
\subsection*{Data Structures}
\begin{DoxyCompactItemize}
\item
-struct \hyperlink{structPostorder__list}{Postorder\-\_\-list}
+struct \hyperlink{structPostorder__list}{Postorder\_\-list}
\item
struct \hyperlink{structTree}{Tree}
\item
-struct \hyperlink{structswString}{sw\-String}
+struct \hyperlink{structswString}{swString}
\end{DoxyCompactItemize}
\subsection*{Variables}
\begin{DoxyCompactItemize}
\item
-int \hyperlink{dist__vars_8h_aa03194c513af6b860e7b33e370b82bdb}{edit\-\_\-backtrack}
-\begin{DoxyCompactList}\small\item\em Produce an alignment of the two structures being compared by tracing the editing path giving the minimum distance. \end{DoxyCompactList}\item
-\hypertarget{dist__vars_8h_ac1605fe3448ad0a0b809c4fb8f6a854a}{char $\ast$ \hyperlink{dist__vars_8h_ac1605fe3448ad0a0b809c4fb8f6a854a}{aligned\-\_\-line} \mbox{[}4\mbox{]}}\label{dist__vars_8h_ac1605fe3448ad0a0b809c4fb8f6a854a}
+int \hyperlink{dist__vars_8h_aa03194c513af6b860e7b33e370b82bdb}{edit\_\-backtrack}
+\begin{DoxyCompactList}\small\item\em Produce an alignment of the two structures being compared by tracing the editing path giving the minimum distance. \item\end{DoxyCompactList}\item
+\hypertarget{dist__vars_8h_ac1605fe3448ad0a0b809c4fb8f6a854a}{
+char $\ast$ \hyperlink{dist__vars_8h_ac1605fe3448ad0a0b809c4fb8f6a854a}{aligned\_\-line} \mbox{[}4\mbox{]}}
+\label{dist__vars_8h_ac1605fe3448ad0a0b809c4fb8f6a854a}
-\begin{DoxyCompactList}\small\item\em Contains the two aligned structures after a call to one of the distance functions with \hyperlink{dist__vars_8h_aa03194c513af6b860e7b33e370b82bdb}{edit\-\_\-backtrack} set to 1. \end{DoxyCompactList}\item
-int \hyperlink{dist__vars_8h_ab65d8ff14c6937612212526a60f59b3c}{cost\-\_\-matrix}
-\begin{DoxyCompactList}\small\item\em Specify the cost matrix to be used for distance calculations. \end{DoxyCompactList}\end{DoxyCompactItemize}
+\begin{DoxyCompactList}\small\item\em Contains the two aligned structures after a call to one of the distance functions with \hyperlink{dist__vars_8h_aa03194c513af6b860e7b33e370b82bdb}{edit\_\-backtrack} set to 1. \item\end{DoxyCompactList}\item
+int \hyperlink{dist__vars_8h_ab65d8ff14c6937612212526a60f59b3c}{cost\_\-matrix}
+\begin{DoxyCompactList}\small\item\em Specify the cost matrix to be used for distance calculations. \item\end{DoxyCompactList}\end{DoxyCompactItemize}
\subsection{Detailed Description}
-Global variables for Distance-\/\-Package.
+Global variables for Distance-\/Package.
\subsection{Variable Documentation}
-\hypertarget{dist__vars_8h_aa03194c513af6b860e7b33e370b82bdb}{\index{dist\-\_\-vars.\-h@{dist\-\_\-vars.\-h}!edit\-\_\-backtrack@{edit\-\_\-backtrack}}
-\index{edit\-\_\-backtrack@{edit\-\_\-backtrack}!dist_vars.h@{dist\-\_\-vars.\-h}}
-\subsubsection[{edit\-\_\-backtrack}]{\setlength{\rightskip}{0pt plus 5cm}int edit\-\_\-backtrack}}\label{dist__vars_8h_aa03194c513af6b860e7b33e370b82bdb}
-
-
-Produce an alignment of the two structures being compared by tracing the editing path giving the minimum distance.
+\hypertarget{dist__vars_8h_aa03194c513af6b860e7b33e370b82bdb}{
+\index{dist\_\-vars.h@{dist\_\-vars.h}!edit\_\-backtrack@{edit\_\-backtrack}}
+\index{edit\_\-backtrack@{edit\_\-backtrack}!dist_vars.h@{dist\_\-vars.h}}
+\subsubsection[{edit\_\-backtrack}]{\setlength{\rightskip}{0pt plus 5cm}int {\bf edit\_\-backtrack}}}
+\label{dist__vars_8h_aa03194c513af6b860e7b33e370b82bdb}
-set to 1 if you want backtracking \hypertarget{dist__vars_8h_ab65d8ff14c6937612212526a60f59b3c}{\index{dist\-\_\-vars.\-h@{dist\-\_\-vars.\-h}!cost\-\_\-matrix@{cost\-\_\-matrix}}
-\index{cost\-\_\-matrix@{cost\-\_\-matrix}!dist_vars.h@{dist\-\_\-vars.\-h}}
-\subsubsection[{cost\-\_\-matrix}]{\setlength{\rightskip}{0pt plus 5cm}int cost\-\_\-matrix}}\label{dist__vars_8h_ab65d8ff14c6937612212526a60f59b3c}
+Produce an alignment of the two structures being compared by tracing the editing path giving the minimum distance. set to 1 if you want backtracking \hypertarget{dist__vars_8h_ab65d8ff14c6937612212526a60f59b3c}{
+\index{dist\_\-vars.h@{dist\_\-vars.h}!cost\_\-matrix@{cost\_\-matrix}}
+\index{cost\_\-matrix@{cost\_\-matrix}!dist_vars.h@{dist\_\-vars.h}}
+\subsubsection[{cost\_\-matrix}]{\setlength{\rightskip}{0pt plus 5cm}int {\bf cost\_\-matrix}}}
+\label{dist__vars_8h_ab65d8ff14c6937612212526a60f59b3c}
-Specify the cost matrix to be used for distance calculations.
-if 0, use the default cost matrix (upper matrix in example), otherwise use Shapiro's costs (lower matrix).
\ No newline at end of file
+Specify the cost matrix to be used for distance calculations. if 0, use the default cost matrix (upper matrix in example), otherwise use Shapiro's costs (lower matrix).
\ No newline at end of file
git://source.jalview.org / jabaws.git / blobdiff