\RequirePackage{calc}
\RequirePackage{color}
\RequirePackage{fancyhdr}
-\RequirePackage{longtable}
\RequirePackage{verbatim}
-\RequirePackage{ifthen}
-\RequirePackage{xtab}
-\RequirePackage{multirow}
-\RequirePackage[table]{xcolor}
-
-% Use helvetica font instead of times roman
-\RequirePackage{helvet}
-\RequirePackage{sectsty}
-\RequirePackage{tocloft}
-\providecommand{\rmdefault}{phv}
-\providecommand{\bfdefault}{bc}
-
% Setup fancy headings
\pagestyle{fancyplain}
\renewcommand{\sectionmark}[1]{%
\markright{\thesection\ #1}%
}
-\fancyhead[LE]{\fancyplain{}{\bfseries\thepage}}
-\fancyhead[CE]{\fancyplain{}{}}
-\fancyhead[RE]{\fancyplain{}{\bfseries\leftmark}}
-\fancyhead[LO]{\fancyplain{}{\bfseries\rightmark}}
-\fancyhead[CO]{\fancyplain{}{}}
-\fancyhead[RO]{\fancyplain{}{\bfseries\thepage}}
-\fancyfoot[LE]{\fancyplain{}{}}
-\fancyfoot[CE]{\fancyplain{}{}}
-\fancyfoot[RE]{\fancyplain{}{\bfseries\scriptsize Generated on Thu Sep 5 2013 11\-:51\-:48 for R\-N\-Alib-\/2.1.2 by Doxygen }}
-\fancyfoot[LO]{\fancyplain{}{\bfseries\scriptsize Generated on Thu Sep 5 2013 11\-:51\-:48 for R\-N\-Alib-\/2.1.2 by Doxygen }}
-\fancyfoot[CO]{\fancyplain{}{}}
-\fancyfoot[RO]{\fancyplain{}{}}
-%---------- Internal commands used in this style file ----------------
-
-\newcommand\tabfill[1]{%
- \dimen@\linewidth%
- \advance\dimen@\@totalleftmargin%
- \advance\dimen@-\dimen\@curtab%
- \parbox[t]\dimen@{\raggedright #1\ifhmode\strut\fi}%
+\lhead[\fancyplain{}{\bfseries\thepage}]{%
+ \fancyplain{}{\bfseries\rightmark}%
}
-
-\newcommand{\ensurespace}[1]{%
- \begingroup
- \setlength{\dimen@}{#1}%
- \vskip\z@\@plus\dimen@
- \penalty -100\vskip\z@\@plus -\dimen@
- \vskip\dimen@
- \penalty 9999%
- \vskip -\dimen@
- \vskip\z@skip % hide the previous |\vskip| from |\addvspace|
- \endgroup
+\rhead[\fancyplain{}{\bfseries\leftmark}]{%
+ \fancyplain{}{\bfseries\thepage}%
}
+\rfoot[\fancyplain{}{\bfseries\scriptsize%
+ Generated on Tue Apr 11 12:10:08 2017 for RNAlib-\/2.1.2 by Doxygen }]{}
+\lfoot[]{\fancyplain{}{\bfseries\scriptsize%
+ Generated on Tue Apr 11 12:10:08 2017 for RNAlib-\/2.1.2 by Doxygen }}
+\cfoot{}
+
+%---------- Internal commands used in this style file ----------------
% Generic environment used by all paragraph-based environments defined
% below. Note that the command \title{...} needs to be defined inside
% those environments!
\newenvironment{DoxyDesc}[1]{%
- \ensurespace{4\baselineskip}%
\begin{list}{}%
{%
\settowidth{\labelwidth}{40pt}%
\setlength{\itemsep}{-4pt}%
\renewcommand{\makelabel}{\entrylabel}%
}%
- \item[#1]%
+ \item[#1:]%
}{%
\end{list}%
}
% Used by @code ... @endcode
\newenvironment{DoxyCode}{%
-
-
-\begin{scriptsize}\begin{alltt}%
+ \footnotesize%
+ \verbatim%
}{%
-\end{alltt}\end{scriptsize}%
+ \endverbatim%
+ \normalsize%
}
% Used by @example, @include, @includelineno and @dontinclude
\end{DoxyDesc}%
}
-% Used by @copyright
-\newenvironment{DoxyCopyright}[1]{%
- \begin{DoxyDesc}{#1}%
-}{%
- \end{DoxyDesc}%
-}
-
% Used by @remark
\newenvironment{DoxyRemark}[1]{%
\begin{DoxyDesc}{#1}%
% Used by @internal
\newenvironment{DoxyInternal}[1]{%
- \paragraph*{#1}%
+ \begin{DoxyDesc}{#1}%
}{%
+ \end{DoxyDesc}%
}
% Used by @par and @paragraph
}
% Used by parameter lists
-\newenvironment{DoxyParams}[2][]{%
- \begin{DoxyDesc}{#2}%
- \item[] \hspace{\fill} \vspace{-40pt}%
- \settowidth{\labelwidth}{40pt}%
- \setlength{\LTleft}{0pt}%
- \setlength{\tabcolsep}{0.01\textwidth}%
- \ifthenelse{\equal{#1}{}}%
- {\begin{longtable}{|>{\raggedleft\hspace{0pt}}p{0.15\textwidth}|%
- p{0.815\textwidth}|}}%
- {\ifthenelse{\equal{#1}{1}}%
- {\begin{longtable}{|>{\centering}p{0.10\textwidth}|%
- >{\raggedleft\hspace{0pt}}p{0.15\textwidth}|%
- p{0.685\textwidth}|}}%
- {\begin{longtable}{|>{\centering}p{0.10\textwidth}|%
- >{\centering\hspace{0pt}}p{0.15\textwidth}|%
- >{\raggedleft\hspace{0pt}}p{0.15\textwidth}|%
- p{0.515\textwidth}|}}%
- }\hline%
-}{%
- \end{longtable}%
- \end{DoxyDesc}%
-}
-
-% Used for fields of simple structs
-\newenvironment{DoxyFields}[1]{%
+\newenvironment{DoxyParams}[1]{%
\begin{DoxyDesc}{#1}%
- \item[] \hspace{\fill} \vspace{-40pt}%
- \settowidth{\labelwidth}{40pt}%
- \setlength{\LTleft}{0pt}%
- \setlength{\tabcolsep}{0.01\textwidth}%
- \begin{longtable}{|>{\raggedleft\hspace{0pt}}p{0.15\textwidth}|%
- p{0.15\textwidth}|%
- p{0.635\textwidth}|}%
- \hline%
+ \begin{description}%
}{%
- \end{longtable}%
+ \end{description}%
\end{DoxyDesc}%
}
-% is used for parameters within a detailed function description
-\newenvironment{DoxyParamCaption}{%
- \renewcommand{\item}[2][]{##1 {\em ##2}}%
- }{%
-}
-
% Used by return value lists
\newenvironment{DoxyRetVals}[1]{%
\begin{DoxyDesc}{#1}%
\begin{description}%
- \item[] \hspace{\fill} \vspace{-25pt}%
- \setlength{\tabcolsep}{0.01\textwidth}%
- \begin{longtable}{|>{\raggedleft\hspace{0pt}}p{0.25\textwidth}|%
- p{0.705\textwidth}|}%
- \hline%
}{%
- \end{longtable}%
\end{description}%
\end{DoxyDesc}%
}
\newenvironment{DoxyExceptions}[1]{%
\begin{DoxyDesc}{#1}%
\begin{description}%
- \item[] \hspace{\fill} \vspace{-25pt}%
- \definecolor{tableShade}{HTML}{F8F8F8}%
- \rowcolors{1}{white}{tableShade}%
- \arrayrulecolor{gray}%
- \setlength{\tabcolsep}{0.01\textwidth}%
- \begin{longtable}{|>{\raggedleft\hspace{0pt}}p{0.25\textwidth}|%
- p{0.705\textwidth}|}%
- \hline%
}{%
- \end{longtable}%
\end{description}%
\end{DoxyDesc}%
}
\newenvironment{DoxyTemplParams}[1]{%
\begin{DoxyDesc}{#1}%
\begin{description}%
- \item[] \hspace{\fill} \vspace{-25pt}%
- \definecolor{tableShade}{HTML}{F8F8F8}%
- \rowcolors{1}{white}{tableShade}%
- \arrayrulecolor{gray}%
- \setlength{\tabcolsep}{0.01\textwidth}%
- \begin{longtable}{|>{\raggedleft\hspace{0pt}}p{0.25\textwidth}|%
- p{0.705\textwidth}|}%
- \hline%
}{%
- \end{longtable}%
\end{description}%
\end{DoxyDesc}%
}
{
\setlength{\tmplength}
{\linewidth/(#1)-\tabcolsep*2-\arrayrulewidth*(#1+1)/(#1)}
- \par\begin{xtabular*}{\linewidth}
+ \par\begin{tabular*}{\linewidth}
{*{#1}{|>{\PBS\raggedright\hspace{0pt}}p{\the\tmplength}}|}
}
-{\end{xtabular*}\par}
+{\end{tabular*}\par}
\newcommand{\entrylabel}[1]{
- {\parbox[b]{\labelwidth-4pt}{\makebox[0pt][l]{%
- \usefont{OT1}{phv}{bc}{n}\color{darkgray}#1}\vspace{1.5\baselineskip}}}}
+ {\parbox[b]{\labelwidth-4pt}{\makebox[0pt][l]{\textbf{#1}}\vspace{1.5\baselineskip}}}}
\newenvironment{Desc}
{\begin{list}{}
{
}
}
{\end{list}}
-\newsavebox{\xrefbox}
-\newlength{\xreflength}
-\newcommand{\xreflabel}[1]{%
- \sbox{\xrefbox}{#1}%
- \setlength{\xreflength}{\wd\xrefbox}%
- \ifthenelse{\xreflength>\labelwidth}{%
- \begin{minipage}{\textwidth}%
- \setlength{\parindent}{0pt}%
- \hangindent=15pt\bfseries #1\vspace{1.2\itemsep}%
- \end{minipage}%
- }{%
- \parbox[b]{\labelwidth}{\makebox[0pt][l]{\textbf{#1}}}%
- }}%
-\newenvironment{DoxyRefList}{%
- \begin{list}{}{%
- \setlength{\labelwidth}{10pt}%
- \setlength{\leftmargin}{\labelwidth}%
- \addtolength{\leftmargin}{\labelsep}%
- \renewcommand{\makelabel}{\xreflabel}%
- }%
- }%
-{\end{list}}
-\newenvironment{DoxyRefDesc}[1]
-{\begin{list}{}{%
- \renewcommand\makelabel[1]{\textbf{##1}}
- \settowidth\labelwidth{\makelabel{#1}}
- \setlength\leftmargin{\labelwidth+\labelsep}}}
-{\end{list}}
\newenvironment{Indent}
{\begin{list}{}{\setlength{\leftmargin}{0.5cm}}
\item[]\ignorespaces}
{\unskip\end{list}}
\setlength{\parindent}{0cm}
\setlength{\parskip}{0.2cm}
-\addtocounter{secnumdepth}{2}
+\addtocounter{secnumdepth}{1}
+\sloppy
\usepackage[T1]{fontenc}
\makeatletter
\renewcommand{\paragraph}{\@startsection{paragraph}{4}{0ex}%
- {-1.0ex}%
- {1.0ex}%
- {\usefont{OT1}{phv}{bc}{n}\color{darkgray}}}
-\renewcommand{\subparagraph}{\@startsection{subparagraph}{5}{0ex}%
- {-1.0ex}%
- {1.0ex}%
- {\usefont{OT1}{phv}{bc}{n}\color{darkgray}}}
+ {-3.25ex plus -1ex minus -0.2ex}%
+ {1.5ex plus 0.2ex}%
+ {\normalfont\normalsize\bfseries}}
\makeatother
-\allsectionsfont{\usefont{OT1}{phv}{bc}{n}\selectfont\color{darkgray}}
\stepcounter{secnumdepth}
\stepcounter{tocdepth}
\definecolor{comment}{rgb}{0.5,0.0,0.0}
git://source.jalview.org / jabaws.git / blobdiff