JWS-117 Compiled all tools with ./compilebin.sh and some were missing related files.

[jabaws.git] / binaries / src / ViennaRNA / doc / latex / energy__const_8h_source.tex

diff --git a/binaries/src/ViennaRNA/doc/latex/energy__const_8h_source.tex b/binaries/src/ViennaRNA/doc/latex/energy__const_8h_source.tex
index 34f93a4..d6fd5df 100644 (file)
--- a/binaries/src/ViennaRNA/doc/latex/energy__const_8h_source.tex
+++ b/binaries/src/ViennaRNA/doc/latex/energy__const_8h_source.tex
@@ -1,19 +1,20 @@
-\hypertarget{energy__const_8h}{\section{energy\-\_\-const.\-h}
-\label{energy__const_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/energy\-\_\-const.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/energy\-\_\-const.\-h}}
+\hypertarget{energy__const_8h_source}{
+\section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/energy\_\-const.h}
 }
 
-\begin{DoxyCode}
+
+\begin{footnotesize}\begin{alltt}
 00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_ENERGY\_CONST\_H\_\_}
 00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_ENERGY\_CONST\_H\_\_}
 00003 \textcolor{preprocessor}{}
 00004 \textcolor{preprocessor}{#include <limits.h>}
 00005 
-\hypertarget{energy__const_8h_source_l00012}{}\hyperlink{energy__const_8h_ab1e4a8d82f24ed5db01dde5f25269cf1}{00012} \textcolor{preprocessor}{#define GASCONST 1.98717  }\textcolor{comment}{/* in [cal/K] */}\textcolor{preprocessor}{}
-00013 \textcolor{preprocessor}{}
+\hypertarget{energy__const_8h_source_l00012}{}\hyperlink{energy__const_8h_ab1e4a8d82f24ed5db01dde5f25269cf1}{00012} \textcolor{preprocessor}{#define GASCONST 1.98717  }\textcolor{comment}{/* in [cal/K] */}
+00013 
 \hypertarget{energy__const_8h_source_l00014}{}\hyperlink{energy__const_8h_a307c72605e3713972b4f4fb2d53ea20e}{00014} \textcolor{preprocessor}{#define K0  273.15}
 00015 \textcolor{preprocessor}{}
-\hypertarget{energy__const_8h_source_l00016}{}\hyperlink{energy__const_8h_a12c2040f25d8e3a7b9e1c2024c618cb6}{00016} \textcolor{preprocessor}{#define INF 10000000 }\textcolor{comment}{/* (INT\_MAX/10) */}\textcolor{preprocessor}{}
-00017 \textcolor{preprocessor}{}
+\hypertarget{energy__const_8h_source_l00016}{}\hyperlink{energy__const_8h_a12c2040f25d8e3a7b9e1c2024c618cb6}{00016} \textcolor{preprocessor}{#define INF 10000000 }\textcolor{comment}{/* (INT\_MAX/10) */}
+00017 
 00018 \textcolor{preprocessor}{#define EMAX (INF/10)}
 00019 \textcolor{preprocessor}{}
 \hypertarget{energy__const_8h_source_l00020}{}\hyperlink{energy__const_8h_a5064c29ab2d1e20c2304b3c67562774d}{00020} \textcolor{preprocessor}{#define FORBIDDEN 9999}
@@ -26,10 +27,10 @@
 00027 \textcolor{preprocessor}{}
 \hypertarget{energy__const_8h_source_l00028}{}\hyperlink{energy__const_8h_ad1bd6eabac419670ddd3c9ed82145988}{00028} \textcolor{preprocessor}{#define MAXLOOP 30}
 00029 \textcolor{preprocessor}{}
-00030 \textcolor{preprocessor}{#define   VRNA\_GQUAD\_MISMATCH\_PENALTY   300   }\textcolor{comment}{/* penalty for incompatible nucleotides in an alignment that
-       destruct a gquad layer */}\textcolor{preprocessor}{}
-00031 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define   VRNA\_GQUAD\_MISMATCH\_NUM\_ALI   1   }\textcolor{comment}{/* maximum number of mismatching sequences in the alignment
-       when gquad should be formed */}\textcolor{preprocessor}{}
-00032 \textcolor{preprocessor}{}
+00030 \textcolor{preprocessor}{#define   VRNA\_GQUAD\_MISMATCH\_PENALTY   300   }\textcolor{comment}{/* penalty for incompatible nucleot
+      ides in an alignment that destruct a gquad layer */}
+00031 \textcolor{preprocessor}{#define   VRNA\_GQUAD\_MISMATCH\_NUM\_ALI   1   }\textcolor{comment}{/* maximum number of mismatching sequ
+      ences in the alignment when gquad should be formed */}
+00032 
 00033 \textcolor{preprocessor}{#endif}
-\end{DoxyCode}
+\end{alltt}\end{footnotesize}