Add missing doc files

[jabaws.git] / binaries / src / ViennaRNA / doc / latex / fold__vars_8h_source.tex

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+\hypertarget{fold__vars_8h}{\section{fold\-\_\-vars.\-h}
+\label{fold__vars_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/fold\-\_\-vars.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/fold\-\_\-vars.\-h}}
+}
+
+\begin{DoxyCode}
+00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_FOLD\_VARS\_H\_\_}
+00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_FOLD\_VARS\_H\_\_}
+00003 \textcolor{preprocessor}{}
+00004 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data\_structures.h}"}
+00005 
+00012 \textcolor{preprocessor}{#define PUBLIC}
+00013 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define PRIVATE static}
+00014 \textcolor{preprocessor}{}
+00018 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    \hyperlink{fold__vars_8h_a0afc287c2464866d94858c39175154af}{fold\_constrained};
+00019 
+00027 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    \hyperlink{fold__vars_8h_a097eccaabd6ae8b4fef83cccff85bb5d}{noLonelyPairs};
+00028 
+00050 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_a72b511ed1201f7e23ec437e468790d74}{dangles};
+00051 
+00055 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_abf380d09e4f1ab94fc6af57cf0ad5d32}{noGU};
+00056 
+00060 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_aa8d1c7b92489179e1eafa562b7bdd259}{no\_closingGU};
+00061 
+00067 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_a4f6265bdf0ead7ff4628a360adbfd77e}{tetra\_loop};
+00068 
+00076 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_afb1ef1166da85092ae8a325e02dcae71}{energy\_set};
+00077 
+00081 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_af9202a1a09f5828dc731e2d9a10fa111}{circ};
+00082 
+00086 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_af2763d55a74663a5e60652b8880baa5b}{csv};
+00087 
+00091 \textcolor{keyword}{extern} \textcolor{keywordtype}{int} \hyperlink{fold__vars_8h_ac408868ba00671cbc7d1d535105af045}{oldAliEn};
+00095 \textcolor{keyword}{extern} \textcolor{keywordtype}{int} \hyperlink{fold__vars_8h_a0656afca1d2853f9ee6591172f5638de}{ribo};            
+00096 
+00101 \textcolor{keyword}{extern} \textcolor{keywordtype}{char} *\hyperlink{fold__vars_8h_a5dbaa0cca2c8c82048a0f0e38e164944}{RibosumFile};   
+00102 
+00110 \textcolor{keyword}{extern} \textcolor{keywordtype}{char} *\hyperlink{fold__vars_8h_a2695d91cc535d09c2eae5c3884e2ec64}{nonstandards};
+00111 
+00118 \textcolor{keyword}{extern} \textcolor{keywordtype}{double} \hyperlink{fold__vars_8h_ab4b11c8d9c758430960896bc3fe82ead}{temperature};
+00119 
+00124 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_af349001ad3b4d008d0051d935b1b6261}{james\_rule};
+00125 
+00129 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold_8h_a80c3c5fd35e7479704cc91d2d0367743}{logML};
+00130 
+00142 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold_8h_ab9b2c3a37a5516614c06d0ab54b97cda}{cut\_point};
+00143 
+00150 \textcolor{keyword}{extern} \hyperlink{structbondT}{bondT}  *\hyperlink{fold__vars_8h_a0244a629b5ab4f58b77590c3dfd130dc}{base\_pair};
+00151 
+00157 \textcolor{keyword}{extern} FLT\_OR\_DBL *\hyperlink{fold__vars_8h_a0f5757427fd5f2f79d6fca0081cd5a52}{pr};
+00158 
+00165 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}   *\hyperlink{fold__vars_8h_a92089ae3a51b5d75a14ce9cc29cc8317}{iindx};
+00166 
+00178 \textcolor{keyword}{extern} \textcolor{keywordtype}{double} \hyperlink{fold__vars_8h_ad3b22044065acc6dee0af68931b52cfd}{pf\_scale};
+00179 
+00186 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    \hyperlink{fold__vars_8h_ad512b5dd4dbec60faccfe137bb474489}{do\_backtrack};
+00187 
+00195 \textcolor{keyword}{extern} \textcolor{keywordtype}{char} \hyperlink{fold__vars_8h_a83bdb43472a259c71e69fa9f70f420c3}{backtrack\_type};
+00196 
+00200 \textcolor{keyword}{extern} \textcolor{keywordtype}{int} \hyperlink{fold__vars_8h_a25f2bdcdf56e813d288845484a13d704}{gquad};
+00201 
+00202 
+00203 \textcolor{keywordtype}{char} * option\_string(\textcolor{keywordtype}{void});
+00204 
+00215 \textcolor{keywordtype}{void} \hyperlink{fold__vars_8h_a4c3257186a796182462f18a5480ac8b3}{set\_model\_details}(\hyperlink{structmodel__detailsT}{model\_detailsT} *md);
+00216 
+00217 \textcolor{preprocessor}{#endif}
+\end{DoxyCode}