JWS-117 Compiled all tools with ./compilebin.sh and some were missing related files.

[jabaws.git] / binaries / src / ViennaRNA / doc / latex / fold__vars_8h_source.tex

diff --git a/binaries/src/ViennaRNA/doc/latex/fold__vars_8h_source.tex b/binaries/src/ViennaRNA/doc/latex/fold__vars_8h_source.tex
index 00ad574..71f67e1 100644 (file)
--- a/binaries/src/ViennaRNA/doc/latex/fold__vars_8h_source.tex
+++ b/binaries/src/ViennaRNA/doc/latex/fold__vars_8h_source.tex
@@ -1,17 +1,18 @@
-\hypertarget{fold__vars_8h}{\section{fold\-\_\-vars.\-h}
-\label{fold__vars_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/fold\-\_\-vars.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/fold\-\_\-vars.\-h}}
+\hypertarget{fold__vars_8h_source}{
+\section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/fold\_\-vars.h}
 }
 
-\begin{DoxyCode}
+
+\begin{footnotesize}\begin{alltt}
 00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_FOLD\_VARS\_H\_\_}
 00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_FOLD\_VARS\_H\_\_}
 00003 \textcolor{preprocessor}{}
-00004 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data\_structures.h}"}
+00004 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data_structures.h}"}
 00005 
 00012 \textcolor{preprocessor}{#define PUBLIC}
 00013 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define PRIVATE static}
 00014 \textcolor{preprocessor}{}
-00018 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    \hyperlink{fold__vars_8h_a0afc287c2464866d94858c39175154af}{fold\_constrained};
+00018 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    \hyperlink{fold__vars_8h_a0afc287c2464866d94858c39175154af}{fold_constrained};
 00019 
 00027 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    \hyperlink{fold__vars_8h_a097eccaabd6ae8b4fef83cccff85bb5d}{noLonelyPairs};
 00028 
@@ -19,11 +20,11 @@
 00051 
 00055 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_abf380d09e4f1ab94fc6af57cf0ad5d32}{noGU};
 00056 
-00060 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_aa8d1c7b92489179e1eafa562b7bdd259}{no\_closingGU};
+00060 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_aa8d1c7b92489179e1eafa562b7bdd259}{no_closingGU};
 00061 
-00067 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_a4f6265bdf0ead7ff4628a360adbfd77e}{tetra\_loop};
+00067 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_a4f6265bdf0ead7ff4628a360adbfd77e}{tetra_loop};
 00068 
-00076 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_afb1ef1166da85092ae8a325e02dcae71}{energy\_set};
+00076 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_afb1ef1166da85092ae8a325e02dcae71}{energy_set};
 00077 
 00081 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_af9202a1a09f5828dc731e2d9a10fa111}{circ};
 00082 
@@ -38,30 +39,30 @@
 00111 
 00118 \textcolor{keyword}{extern} \textcolor{keywordtype}{double} \hyperlink{fold__vars_8h_ab4b11c8d9c758430960896bc3fe82ead}{temperature};
 00119 
-00124 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_af349001ad3b4d008d0051d935b1b6261}{james\_rule};
+00124 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold__vars_8h_af349001ad3b4d008d0051d935b1b6261}{james_rule};
 00125 
 00129 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold_8h_a80c3c5fd35e7479704cc91d2d0367743}{logML};
 00130 
-00142 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold_8h_ab9b2c3a37a5516614c06d0ab54b97cda}{cut\_point};
+00142 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}  \hyperlink{fold_8h_ab9b2c3a37a5516614c06d0ab54b97cda}{cut_point};
 00143 
-00150 \textcolor{keyword}{extern} \hyperlink{structbondT}{bondT}  *\hyperlink{fold__vars_8h_a0244a629b5ab4f58b77590c3dfd130dc}{base\_pair};
+00150 \textcolor{keyword}{extern} \hyperlink{structbondT}{bondT}  *\hyperlink{fold__vars_8h_a0244a629b5ab4f58b77590c3dfd130dc}{base_pair};
 00151 
 00157 \textcolor{keyword}{extern} FLT\_OR\_DBL *\hyperlink{fold__vars_8h_a0f5757427fd5f2f79d6fca0081cd5a52}{pr};
 00158 
 00165 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}   *\hyperlink{fold__vars_8h_a92089ae3a51b5d75a14ce9cc29cc8317}{iindx};
 00166 
-00178 \textcolor{keyword}{extern} \textcolor{keywordtype}{double} \hyperlink{fold__vars_8h_ad3b22044065acc6dee0af68931b52cfd}{pf\_scale};
+00178 \textcolor{keyword}{extern} \textcolor{keywordtype}{double} \hyperlink{fold__vars_8h_ad3b22044065acc6dee0af68931b52cfd}{pf_scale};
 00179 
-00186 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    \hyperlink{fold__vars_8h_ad512b5dd4dbec60faccfe137bb474489}{do\_backtrack};
+00186 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    \hyperlink{fold__vars_8h_ad512b5dd4dbec60faccfe137bb474489}{do_backtrack};
 00187 
-00195 \textcolor{keyword}{extern} \textcolor{keywordtype}{char} \hyperlink{fold__vars_8h_a83bdb43472a259c71e69fa9f70f420c3}{backtrack\_type};
+00195 \textcolor{keyword}{extern} \textcolor{keywordtype}{char} \hyperlink{fold__vars_8h_a83bdb43472a259c71e69fa9f70f420c3}{backtrack_type};
 00196 
 00200 \textcolor{keyword}{extern} \textcolor{keywordtype}{int} \hyperlink{fold__vars_8h_a25f2bdcdf56e813d288845484a13d704}{gquad};
 00201 
 00202 
 00203 \textcolor{keywordtype}{char} * option\_string(\textcolor{keywordtype}{void});
 00204 
-00215 \textcolor{keywordtype}{void} \hyperlink{fold__vars_8h_a4c3257186a796182462f18a5480ac8b3}{set\_model\_details}(\hyperlink{structmodel__detailsT}{model\_detailsT} *md);
+00215 \textcolor{keywordtype}{void} \hyperlink{fold__vars_8h_a4c3257186a796182462f18a5480ac8b3}{set_model_details}(\hyperlink{structmodel__detailsT}{model_detailsT} *md);
 00216 
 00217 \textcolor{preprocessor}{#endif}
-\end{DoxyCode}
+\end{alltt}\end{footnotesize}