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JWS-117 Compiled all tools with ./compilebin.sh and some were missing related files.
[jabaws.git] / binaries / src / ViennaRNA / doc / latex / group__consensus__fold.aux
diff --git a/binaries/src/ViennaRNA/doc/latex/group__consensus__fold.aux b/binaries/src/ViennaRNA/doc/latex/group__consensus__fold.aux
index 9e97e4f..76b1fb8 100644 (file)
--- a/binaries/src/ViennaRNA/doc/latex/group__consensus__fold.aux
+++ b/binaries/src/ViennaRNA/doc/latex/group__consensus__fold.aux
@@ -1,50 +1,28 @@
 \relax 
-\@writefile{toc}{\contentsline {section}{\numberline {9.14}Predicting Consensus Structures from Alignment(s)}{50}{section.9.14}}
-\newlabel{group__consensus__fold}{{9.14}{50}{Predicting Consensus Structures from Alignment(s)\relax }{section.9.14}{}}
-\newlabel{group__consensus__fold_ga5e125c9586fcd4e2e1559fe76f7289cc}{{9.14}{50}{Functions\relax }{section*.32}{}}
-\citation{hofacker:2002}
-\citation{bernhart:2008}
-\gdef \LT@xxix {\LT@entry 
-    {1}{78.18367pt}\LT@entry 
-    {1}{380.5249pt}}
-\gdef \LT@xxx {\LT@entry 
-    {1}{78.18367pt}\LT@entry 
-    {1}{380.5249pt}}
-\@writefile{toc}{\contentsline {subsection}{\numberline {9.14.1}Detailed Description}{51}{subsection.9.14.1}}
-\@writefile{brf}{\backcite{hofacker:2002}{{51}{9.14.1}{subsection.9.14.1}}}
-\@writefile{brf}{\backcite{bernhart:2008}{{51}{9.14.1}{subsection.9.14.1}}}
-\@writefile{toc}{\contentsline {subsection}{\numberline {9.14.2}Function Documentation}{51}{subsection.9.14.2}}
-\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.14.2.1}get\discretionary {-}{}{}\_\discretionary {-}{}{}mpi}{51}{subsubsection.9.14.2.1}}
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-\gdef \LT@xxxi {\LT@entry 
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-\newlabel{group__consensus__fold_ga298a420a8c879202e2617b3f724fde38}{{9.14.2.5}{52}{free\-\_\-sequence\-\_\-arrays\relax }{subsubsection.9.14.2.5}{}}
-\gdef \LT@xxxiv {\LT@entry 
-    {1}{78.18367pt}\LT@entry 
-    {1}{380.5249pt}}
-\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.14.2.6}get\discretionary {-}{}{}\_\discretionary {-}{}{}alipf\discretionary {-}{}{}\_\discretionary {-}{}{}arrays}{53}{subsubsection.9.14.2.6}}
-\newlabel{group__consensus__fold_ga0cc49457fd79eeb04d4a7f97c868b09b}{{9.14.2.6}{53}{get\-\_\-alipf\-\_\-arrays\relax }{subsubsection.9.14.2.6}{}}
-\@writefile{toc}{\contentsline {subsection}{\numberline {9.14.3}Variable Documentation}{53}{subsection.9.14.3}}
-\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.14.3.1}cv\discretionary {-}{}{}\_\discretionary {-}{}{}fact}{53}{subsubsection.9.14.3.1}}
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-\newlabel{group__consensus__fold_ga502948a122a2af5b914355b1f3ea2f61}{{9.14.3.2}{53}{nc\-\_\-fact\relax }{subsubsection.9.14.3.2}{}}
+\@writefile{toc}{\contentsline {section}{\numberline {9.14}Predicting Consensus Structures from Alignment(s)}{66}{section.9.14}}
+\newlabel{group__consensus__fold}{{9.14}{66}{Predicting Consensus Structures from Alignment(s)\relax }{section.9.14}{}}
+\newlabel{group__consensus__fold_ga5e125c9586fcd4e2e1559fe76f7289cc}{{9.14}{66}{Functions\relax }{section*.33}{}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {9.14.1}Detailed Description}{67}{subsection.9.14.1}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {9.14.2}Function Documentation}{67}{subsection.9.14.2}}
+\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.14.2.1}get\_\discretionary {-}{}{}mpi}{67}{subsubsection.9.14.2.1}}
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+\newlabel{group__consensus__fold_ga1c48869c03b49a342bf4cbdd61900081}{{9.14.2.2}{68}{energy\_\-of\_\-alistruct\relax }{subsubsection.9.14.2.2}{}}
+\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.14.2.3}encode\_\discretionary {-}{}{}ali\_\discretionary {-}{}{}sequence}{68}{subsubsection.9.14.2.3}}
+\newlabel{group__consensus__fold_gaa3e40277c837d6f7603afe319884c786}{{9.14.2.3}{68}{encode\_\-ali\_\-sequence\relax }{subsubsection.9.14.2.3}{}}
+\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.14.2.4}alloc\_\discretionary {-}{}{}sequence\_\discretionary {-}{}{}arrays}{68}{subsubsection.9.14.2.4}}
+\newlabel{group__consensus__fold_ga8a560930f7f2582cc3967723a86cfdfa}{{9.14.2.4}{68}{alloc\_\-sequence\_\-arrays\relax }{subsubsection.9.14.2.4}{}}
+\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.14.2.5}free\_\discretionary {-}{}{}sequence\_\discretionary {-}{}{}arrays}{69}{subsubsection.9.14.2.5}}
+\newlabel{group__consensus__fold_ga298a420a8c879202e2617b3f724fde38}{{9.14.2.5}{69}{free\_\-sequence\_\-arrays\relax }{subsubsection.9.14.2.5}{}}
+\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.14.2.6}get\_\discretionary {-}{}{}alipf\_\discretionary {-}{}{}arrays}{69}{subsubsection.9.14.2.6}}
+\newlabel{group__consensus__fold_ga5349960075b1847720a2e9df021e2675}{{9.14.2.6}{69}{get\_\-alipf\_\-arrays\relax }{subsubsection.9.14.2.6}{}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {9.14.3}Variable Documentation}{70}{subsection.9.14.3}}
+\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.14.3.1}cv\_\discretionary {-}{}{}fact}{70}{subsubsection.9.14.3.1}}
+\newlabel{group__consensus__fold_gaf3cbac6ff5d706d6e414677841ddf94c}{{9.14.3.1}{70}{cv\_\-fact\relax }{subsubsection.9.14.3.1}{}}
+\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.14.3.2}nc\_\discretionary {-}{}{}fact}{70}{subsubsection.9.14.3.2}}
+\newlabel{group__consensus__fold_ga502948a122a2af5b914355b1f3ea2f61}{{9.14.3.2}{70}{nc\_\-fact\relax }{subsubsection.9.14.3.2}{}}
 \@setckpt{group__consensus__fold}{
-\setcounter{page}{54}
+\setcounter{page}{71}
 \setcounter{equation}{0}
 \setcounter{enumi}{0}
 \setcounter{enumii}{0}
@@ -60,18 +38,11 @@
 \setcounter{paragraph}{0}
 \setcounter{subparagraph}{0}
 \setcounter{figure}{0}
-\setcounter{table}{34}
-\setcounter{NAT@ctr}{0}
+\setcounter{table}{0}
 \setcounter{float@type}{8}
+\setcounter{lstlisting}{0}
 \setcounter{lstnumber}{1}
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-\setcounter{bookmark@seq@number}{94}
-\setcounter{lofdepth}{1}
-\setcounter{lotdepth}{1}
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-\setcounter{LT@chunks}{1}
-\setcounter{PWSTtable}{0}
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 \setcounter{section@level}{3}
 }