JWS-117 Compiled all tools with ./compilebin.sh and some were missing related files.

[jabaws.git] / binaries / src / ViennaRNA / doc / latex / group__dos.tex

diff --git a/binaries/src/ViennaRNA/doc/latex/group__dos.tex b/binaries/src/ViennaRNA/doc/latex/group__dos.tex
index 534895e..8229cbf 100644 (file)
--- a/binaries/src/ViennaRNA/doc/latex/group__dos.tex
+++ b/binaries/src/ViennaRNA/doc/latex/group__dos.tex
@@ -1,37 +1,36 @@
-\hypertarget{group__dos}{\section{Compute the Density of States}
+\hypertarget{group__dos}{
+\section{Compute the Density of States}
 \label{group__dos}\index{Compute the Density of States@{Compute the Density of States}}
 }
-Collaboration diagram for Compute the Density of States\-:
-\nopagebreak
+
+
+Collaboration diagram for Compute the Density of States:\nopagebreak
 \begin{figure}[H]
 \begin{center}
 \leavevmode
-\includegraphics[width=320pt]{group__dos}
+\includegraphics[width=201pt]{group__dos}
 \end{center}
 \end{figure}
 \subsection*{Variables}
 \begin{DoxyCompactItemize}
 \item 
-int \hyperlink{group__dos_ga937634a76b46a22530a74906f1957a9e}{density\-\_\-of\-\_\-states} \mbox{[}\hyperlink{data__structures_8h_a5ec740b80afb4906ba4311dbd8ddbd89}{M\-A\-X\-D\-O\-S}+1\mbox{]}
-\begin{DoxyCompactList}\small\item\em The Density of States. \end{DoxyCompactList}\end{DoxyCompactItemize}
-
-
-\subsection{Detailed Description}
+int \hyperlink{group__dos_ga937634a76b46a22530a74906f1957a9e}{density\_\-of\_\-states} \mbox{[}MAXDOS+1\mbox{]}
+\begin{DoxyCompactList}\small\item\em The Density of States. \item\end{DoxyCompactList}\end{DoxyCompactItemize}
 
 
 \subsection{Variable Documentation}
-\hypertarget{group__dos_ga937634a76b46a22530a74906f1957a9e}{\index{Compute the Density of States@{Compute the Density of States}!density\-\_\-of\-\_\-states@{density\-\_\-of\-\_\-states}}
-\index{density\-\_\-of\-\_\-states@{density\-\_\-of\-\_\-states}!Compute the Density of States@{Compute the Density of States}}
-\subsubsection[{density\-\_\-of\-\_\-states}]{\setlength{\rightskip}{0pt plus 5cm}int density\-\_\-of\-\_\-states\mbox{[}{\bf M\-A\-X\-D\-O\-S}+1\mbox{]}}}\label{group__dos_ga937634a76b46a22530a74906f1957a9e}
-
+\hypertarget{group__dos_ga937634a76b46a22530a74906f1957a9e}{
+\index{dos@{dos}!density\_\-of\_\-states@{density\_\-of\_\-states}}
+\index{density\_\-of\_\-states@{density\_\-of\_\-states}!dos@{dos}}
+\subsubsection[{density\_\-of\_\-states}]{\setlength{\rightskip}{0pt plus 5cm}int {\bf density\_\-of\_\-states}\mbox{[}MAXDOS+1\mbox{]}}}
+\label{group__dos_ga937634a76b46a22530a74906f1957a9e}
 
-The Density of States. 
 
-This array contains the density of states for an R\-N\-A sequences after a call to \hyperlink{group__subopt__wuchty_ga554dedfcdb249fdf151caade58666e4d}{subopt\-\_\-par()}, \hyperlink{group__subopt__wuchty_ga700f662506a233e42dd7fda74fafd40e}{subopt()} or \hyperlink{group__subopt__wuchty_ga8634516e4740e0b6c9a46d2bae940340}{subopt\-\_\-circ()}.
+The Density of States. This array contains the density of states for an RNA sequences after a call to \hyperlink{group__subopt__wuchty_ga554dedfcdb249fdf151caade58666e4d}{subopt\_\-par()}, \hyperlink{group__subopt__wuchty_ga700f662506a233e42dd7fda74fafd40e}{subopt()} or \hyperlink{group__subopt__wuchty_ga8634516e4740e0b6c9a46d2bae940340}{subopt\_\-circ()}.
 
 \begin{DoxyPrecond}{Precondition}
-Call one of the functions \hyperlink{group__subopt__wuchty_ga554dedfcdb249fdf151caade58666e4d}{subopt\-\_\-par()}, \hyperlink{group__subopt__wuchty_ga700f662506a233e42dd7fda74fafd40e}{subopt()} or \hyperlink{group__subopt__wuchty_ga8634516e4740e0b6c9a46d2bae940340}{subopt\-\_\-circ()} prior accessing the contents of this array 
+Call one of the functions \hyperlink{group__subopt__wuchty_ga554dedfcdb249fdf151caade58666e4d}{subopt\_\-par()}, \hyperlink{group__subopt__wuchty_ga700f662506a233e42dd7fda74fafd40e}{subopt()} or \hyperlink{group__subopt__wuchty_ga8634516e4740e0b6c9a46d2bae940340}{subopt\_\-circ()} prior accessing the contents of this array 
 \end{DoxyPrecond}
-\begin{DoxySeeAlso}{See Also}
-\hyperlink{group__subopt__wuchty_ga554dedfcdb249fdf151caade58666e4d}{subopt\-\_\-par()}, \hyperlink{group__subopt__wuchty_ga700f662506a233e42dd7fda74fafd40e}{subopt()}, \hyperlink{group__subopt__wuchty_ga8634516e4740e0b6c9a46d2bae940340}{subopt\-\_\-circ()} 
+\begin{DoxySeeAlso}{See also}
+\hyperlink{group__subopt__wuchty_ga554dedfcdb249fdf151caade58666e4d}{subopt\_\-par()}, \hyperlink{group__subopt__wuchty_ga700f662506a233e42dd7fda74fafd40e}{subopt()}, \hyperlink{group__subopt__wuchty_ga8634516e4740e0b6c9a46d2bae940340}{subopt\_\-circ()} 
 \end{DoxySeeAlso}