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[jabaws.git] / binaries / src / ViennaRNA / doc / latex / group__local__fold.tex

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+\hypertarget{group__local__fold}{\section{Predicting Locally stable structures of large sequences}
+\label{group__local__fold}\index{Predicting Locally stable structures of large sequences@{Predicting Locally stable structures of large sequences}}
+}
+Collaboration diagram for Predicting Locally stable structures of large sequences\-:
+\nopagebreak
+\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[width=350pt]{group__local__fold}
+\end{center}
+\end{figure}
+\subsection*{Modules}
+\begin{DoxyCompactItemize}
+\item 
+\hyperlink{group__local__mfe__fold}{Local M\-F\-E structure Prediction and Z-\/scores}
+\item 
+\hyperlink{group__local__pf__fold}{Partition functions for locally stable secondary structures}
+\item 
+\hyperlink{group__local__consensus__fold}{Local M\-F\-E consensus structures for Sequence Alignments}
+\end{DoxyCompactItemize}
+\subsection*{Files}
+\begin{DoxyCompactItemize}
+\item 
+file \hyperlink{Lfold_8h}{Lfold.\-h}
+\begin{DoxyCompactList}\small\item\em Predicting local M\-F\-E structures of large sequences. \end{DoxyCompactList}\end{DoxyCompactItemize}
+
+
+\subsection{Detailed Description}
+Local structures can be predicted by a modified version of the \hyperlink{group__mfe__fold_gaadafcb0f140795ae62e5ca027e335a9b}{fold()} algorithm that restricts the span of all base pairs. 
\ No newline at end of file