JWS-117 Compiled all tools with ./compilebin.sh and some were missing related files.

[jabaws.git] / binaries / src / ViennaRNA / doc / latex / group__local__mfe__fold.tex

diff --git a/binaries/src/ViennaRNA/doc/latex/group__local__mfe__fold.tex b/binaries/src/ViennaRNA/doc/latex/group__local__mfe__fold.tex
index 3d55879..31c4087 100644 (file)
--- a/binaries/src/ViennaRNA/doc/latex/group__local__mfe__fold.tex
+++ b/binaries/src/ViennaRNA/doc/latex/group__local__mfe__fold.tex
@@ -1,72 +1,43 @@
-\hypertarget{group__local__mfe__fold}{\section{Local M\-F\-E structure Prediction and Z-\/scores}
-\label{group__local__mfe__fold}\index{Local M\-F\-E structure Prediction and Z-\/scores@{Local M\-F\-E structure Prediction and Z-\/scores}}
+\hypertarget{group__local__mfe__fold}{
+\section{Local MFE structure Prediction and Z-\/scores}
+\label{group__local__mfe__fold}\index{Local MFE structure Prediction and Z-\/scores@{Local MFE structure Prediction and Z-\/scores}}
 }
-Collaboration diagram for Local M\-F\-E structure Prediction and Z-\/scores\-:
-\nopagebreak
+
+
+Collaboration diagram for Local MFE structure Prediction and Z-\/scores:\nopagebreak
 \begin{figure}[H]
 \begin{center}
 \leavevmode
-\includegraphics[width=350pt]{group__local__mfe__fold}
+\includegraphics[width=280pt]{group__local__mfe__fold}
 \end{center}
 \end{figure}
 \subsection*{Functions}
 \begin{DoxyCompactItemize}
 \item 
 float \hyperlink{group__local__mfe__fold_ga16e5a70e60835bb969eaecbe6482f1be}{Lfold} (const char $\ast$string, char $\ast$structure, int maxdist)
-\begin{DoxyCompactList}\small\item\em The local analog to \hyperlink{group__mfe__fold_gaadafcb0f140795ae62e5ca027e335a9b}{fold()}. \end{DoxyCompactList}\item 
-float \hyperlink{group__local__mfe__fold_gab6d79eecc180f586679f7b85cce5cbe9}{Lfoldz} (const char $\ast$string, char $\ast$structure, int maxdist, int zsc, double min\-\_\-z)
+\begin{DoxyCompactList}\small\item\em The local analog to \hyperlink{group__mfe__fold_gaadafcb0f140795ae62e5ca027e335a9b}{fold()}. \item\end{DoxyCompactList}\item 
+float \hyperlink{group__local__mfe__fold_gab6d79eecc180f586679f7b85cce5cbe9}{Lfoldz} (const char $\ast$string, char $\ast$structure, int maxdist, int zsc, double min\_\-z)
 \end{DoxyCompactItemize}
 
 
-\subsection{Detailed Description}
-
-
 \subsection{Function Documentation}
-\hypertarget{group__local__mfe__fold_ga16e5a70e60835bb969eaecbe6482f1be}{\index{Local M\-F\-E structure Prediction and Z-\/scores@{Local M\-F\-E structure Prediction and Z-\/scores}!Lfold@{Lfold}}
-\index{Lfold@{Lfold}!Local MFE structure Prediction and Z-scores@{Local M\-F\-E structure Prediction and Z-\/scores}}
-\subsubsection[{Lfold}]{\setlength{\rightskip}{0pt plus 5cm}float Lfold (
-\begin{DoxyParamCaption}
-\item[{const char $\ast$}]{string, }
-\item[{char $\ast$}]{structure, }
-\item[{int}]{maxdist}
-\end{DoxyParamCaption}
-)}}\label{group__local__mfe__fold_ga16e5a70e60835bb969eaecbe6482f1be}
-
+\hypertarget{group__local__mfe__fold_ga16e5a70e60835bb969eaecbe6482f1be}{
+\index{local\_\-mfe\_\-fold@{local\_\-mfe\_\-fold}!Lfold@{Lfold}}
+\index{Lfold@{Lfold}!local_mfe_fold@{local\_\-mfe\_\-fold}}
+\subsubsection[{Lfold}]{\setlength{\rightskip}{0pt plus 5cm}float Lfold (const char $\ast$ {\em string}, \/  char $\ast$ {\em structure}, \/  int {\em maxdist})}}
+\label{group__local__mfe__fold_ga16e5a70e60835bb969eaecbe6482f1be}
 
-The local analog to \hyperlink{group__mfe__fold_gaadafcb0f140795ae62e5ca027e335a9b}{fold()}. 
 
-Computes the minimum free energy structure including only base pairs with a span smaller than 'maxdist'
+The local analog to \hyperlink{group__mfe__fold_gaadafcb0f140795ae62e5ca027e335a9b}{fold()}. Computes the minimum free energy structure including only base pairs with a span smaller than 'maxdist'
 
 
 \begin{DoxyParams}{Parameters}
-{\em string} & \\
-\hline
-{\em structure} & \\
-\hline
-{\em maxdist} & \\
-\hline
-\end{DoxyParams}
-\hypertarget{group__local__mfe__fold_gab6d79eecc180f586679f7b85cce5cbe9}{\index{Local M\-F\-E structure Prediction and Z-\/scores@{Local M\-F\-E structure Prediction and Z-\/scores}!Lfoldz@{Lfoldz}}
-\index{Lfoldz@{Lfoldz}!Local MFE structure Prediction and Z-scores@{Local M\-F\-E structure Prediction and Z-\/scores}}
-\subsubsection[{Lfoldz}]{\setlength{\rightskip}{0pt plus 5cm}float Lfoldz (
-\begin{DoxyParamCaption}
-\item[{const char $\ast$}]{string, }
-\item[{char $\ast$}]{structure, }
-\item[{int}]{maxdist, }
-\item[{int}]{zsc, }
-\item[{double}]{min\-\_\-z}
-\end{DoxyParamCaption}
-)}}\label{group__local__mfe__fold_gab6d79eecc180f586679f7b85cce5cbe9}
+\item[{\em string}]\item[{\em structure}]\item[{\em maxdist}]\end{DoxyParams}
+\hypertarget{group__local__mfe__fold_gab6d79eecc180f586679f7b85cce5cbe9}{
+\index{local\_\-mfe\_\-fold@{local\_\-mfe\_\-fold}!Lfoldz@{Lfoldz}}
+\index{Lfoldz@{Lfoldz}!local_mfe_fold@{local\_\-mfe\_\-fold}}
+\subsubsection[{Lfoldz}]{\setlength{\rightskip}{0pt plus 5cm}float Lfoldz (const char $\ast$ {\em string}, \/  char $\ast$ {\em structure}, \/  int {\em maxdist}, \/  int {\em zsc}, \/  double {\em min\_\-z})}}
+\label{group__local__mfe__fold_gab6d79eecc180f586679f7b85cce5cbe9}
 
 \begin{DoxyParams}{Parameters}
-{\em string} & \\
-\hline
-{\em structure} & \\
-\hline
-{\em maxdist} & \\
-\hline
-{\em zsc} & \\
-\hline
-{\em min\-\_\-z} & \\
-\hline
-\end{DoxyParams}
+\item[{\em string}]\item[{\em structure}]\item[{\em maxdist}]\item[{\em zsc}]\item[{\em min\_\-z}]\end{DoxyParams}