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JWS-117 Compiled all tools with ./compilebin.sh and some were missing related files.
[jabaws.git] / binaries / src / ViennaRNA / doc / latex / group__pf__cofold.aux
diff --git a/binaries/src/ViennaRNA/doc/latex/group__pf__cofold.aux b/binaries/src/ViennaRNA/doc/latex/group__pf__cofold.aux
index cb22d1e..af51b8d 100644 (file)
--- a/binaries/src/ViennaRNA/doc/latex/group__pf__cofold.aux
+++ b/binaries/src/ViennaRNA/doc/latex/group__pf__cofold.aux
@@ -1,47 +1,27 @@
 \relax 
-\@writefile{toc}{\contentsline {section}{\numberline {9.12}Partition Function for two hybridized Sequences}{44}{section.9.12}}
-\newlabel{group__pf__cofold}{{9.12}{44}{Partition Function for two hybridized Sequences\relax }{section.9.12}{}}
-\newlabel{group__pf__cofold_gade3ce34ae8214811374b1d28a40dc247}{{9.12}{44}{Functions\relax }{section*.26}{}}
-\citation{bernhart:2006}
-\gdef \LT@xxi {\LT@entry 
-    {1}{78.18367pt}\LT@entry 
-    {1}{380.5249pt}}
-\gdef \LT@xxii {\LT@entry 
-    {1}{78.18367pt}\LT@entry 
-    {1}{380.5249pt}}
-\newlabel{group__pf__cofold_gaff27888c4088cc1f60fd59cbd589474c}{{9.12}{45}{Variables\relax }{section*.27}{}}
-\newlabel{group__pf__cofold_gac2d1851a710a8561390861155ca988fe}{{9.12}{45}{Variables\relax }{section*.27}{}}
-\@writefile{toc}{\contentsline {subsection}{\numberline {9.12.1}Detailed Description}{45}{subsection.9.12.1}}
-\@writefile{brf}{\backcite{bernhart:2006}{{45}{9.12.1}{subsection.9.12.1}}}
-\@writefile{toc}{\contentsline {subsection}{\numberline {9.12.2}Function Documentation}{45}{subsection.9.12.2}}
-\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.12.2.1}co\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}fold}{45}{subsubsection.9.12.2.1}}
-\newlabel{group__pf__cofold_gaa86a5f998789ed71813d23d7307a791b}{{9.12.2.1}{45}{co\-\_\-pf\-\_\-fold\relax }{subsubsection.9.12.2.1}{}}
-\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.12.2.2}co\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}fold\discretionary {-}{}{}\_\discretionary {-}{}{}par}{45}{subsubsection.9.12.2.2}}
-\newlabel{group__pf__cofold_gabd873b450832ab5f21101fc5ab354d21}{{9.12.2.2}{45}{co\-\_\-pf\-\_\-fold\-\_\-par\relax }{subsubsection.9.12.2.2}{}}
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-    {1}{380.5249pt}}
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-\newlabel{group__pf__cofold_ga11f0252c1d2c4697253ff4b5bd392d3c}{{9.12.2.3}{46}{export\-\_\-co\-\_\-bppm\relax }{subsubsection.9.12.2.3}{}}
-\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.12.2.4}update\discretionary {-}{}{}\_\discretionary {-}{}{}co\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}params}{46}{subsubsection.9.12.2.4}}
-\newlabel{group__pf__cofold_ga6e0f36c1f9b7d9dd4bfbad914c1119e5}{{9.12.2.4}{46}{update\-\_\-co\-\_\-pf\-\_\-params\relax }{subsubsection.9.12.2.4}{}}
-\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.12.2.5}update\discretionary {-}{}{}\_\discretionary {-}{}{}co\discretionary {-}{}{}\_\discretionary {-}{}{}pf\discretionary {-}{}{}\_\discretionary {-}{}{}params\discretionary {-}{}{}\_\discretionary {-}{}{}par}{46}{subsubsection.9.12.2.5}}
-\newlabel{group__pf__cofold_ga117d880df45bef444d5e2785ffa40a53}{{9.12.2.5}{46}{update\-\_\-co\-\_\-pf\-\_\-params\-\_\-par\relax }{subsubsection.9.12.2.5}{}}
-\gdef \LT@xxiv {\LT@entry 
-    {1}{78.18367pt}\LT@entry 
-    {1}{380.5249pt}}
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-    {1}{78.18367pt}\LT@entry 
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-\gdef \LT@xxvi {\LT@entry 
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-    {1}{380.5249pt}}
-\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.12.2.6}compute\discretionary {-}{}{}\_\discretionary {-}{}{}probabilities}{47}{subsubsection.9.12.2.6}}
-\newlabel{group__pf__cofold_ga15ae04ac5ab84e876dcf0093120cb617}{{9.12.2.6}{47}{compute\-\_\-probabilities\relax }{subsubsection.9.12.2.6}{}}
-\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.12.2.7}get\discretionary {-}{}{}\_\discretionary {-}{}{}concentrations}{47}{subsubsection.9.12.2.7}}
-\newlabel{group__pf__cofold_ga5545cb936ac4ff93c7d699d46e72e8c7}{{9.12.2.7}{47}{get\-\_\-concentrations\relax }{subsubsection.9.12.2.7}{}}
+\@writefile{toc}{\contentsline {section}{\numberline {9.12}Partition Function for two hybridized Sequences}{58}{section.9.12}}
+\newlabel{group__pf__cofold}{{9.12}{58}{Partition Function for two hybridized Sequences\relax }{section.9.12}{}}
+\newlabel{group__pf__cofold_gade3ce34ae8214811374b1d28a40dc247}{{9.12}{58}{Functions\relax }{section*.28}{}}
+\newlabel{group__pf__cofold_gaff27888c4088cc1f60fd59cbd589474c}{{9.12}{59}{Variables\relax }{section*.29}{}}
+\newlabel{group__pf__cofold_gac2d1851a710a8561390861155ca988fe}{{9.12}{59}{Variables\relax }{section*.29}{}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {9.12.1}Detailed Description}{59}{subsection.9.12.1}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {9.12.2}Function Documentation}{59}{subsection.9.12.2}}
+\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.12.2.1}co\_\discretionary {-}{}{}pf\_\discretionary {-}{}{}fold}{59}{subsubsection.9.12.2.1}}
+\newlabel{group__pf__cofold_gaa86a5f998789ed71813d23d7307a791b}{{9.12.2.1}{59}{co\_\-pf\_\-fold\relax }{subsubsection.9.12.2.1}{}}
+\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.12.2.2}co\_\discretionary {-}{}{}pf\_\discretionary {-}{}{}fold\_\discretionary {-}{}{}par}{60}{subsubsection.9.12.2.2}}
+\newlabel{group__pf__cofold_gabd873b450832ab5f21101fc5ab354d21}{{9.12.2.2}{60}{co\_\-pf\_\-fold\_\-par\relax }{subsubsection.9.12.2.2}{}}
+\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.12.2.3}export\_\discretionary {-}{}{}co\_\discretionary {-}{}{}bppm}{60}{subsubsection.9.12.2.3}}
+\newlabel{group__pf__cofold_ga11f0252c1d2c4697253ff4b5bd392d3c}{{9.12.2.3}{60}{export\_\-co\_\-bppm\relax }{subsubsection.9.12.2.3}{}}
+\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.12.2.4}update\_\discretionary {-}{}{}co\_\discretionary {-}{}{}pf\_\discretionary {-}{}{}params}{60}{subsubsection.9.12.2.4}}
+\newlabel{group__pf__cofold_ga6e0f36c1f9b7d9dd4bfbad914c1119e5}{{9.12.2.4}{60}{update\_\-co\_\-pf\_\-params\relax }{subsubsection.9.12.2.4}{}}
+\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.12.2.5}update\_\discretionary {-}{}{}co\_\discretionary {-}{}{}pf\_\discretionary {-}{}{}params\_\discretionary {-}{}{}par}{61}{subsubsection.9.12.2.5}}
+\newlabel{group__pf__cofold_ga117d880df45bef444d5e2785ffa40a53}{{9.12.2.5}{61}{update\_\-co\_\-pf\_\-params\_\-par\relax }{subsubsection.9.12.2.5}{}}
+\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.12.2.6}compute\_\discretionary {-}{}{}probabilities}{61}{subsubsection.9.12.2.6}}
+\newlabel{group__pf__cofold_ga15ae04ac5ab84e876dcf0093120cb617}{{9.12.2.6}{61}{compute\_\-probabilities\relax }{subsubsection.9.12.2.6}{}}
+\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.12.2.7}get\_\discretionary {-}{}{}concentrations}{62}{subsubsection.9.12.2.7}}
+\newlabel{group__pf__cofold_ga5545cb936ac4ff93c7d699d46e72e8c7}{{9.12.2.7}{62}{get\_\-concentrations\relax }{subsubsection.9.12.2.7}{}}
 \@setckpt{group__pf__cofold}{
-\setcounter{page}{48}
+\setcounter{page}{63}
 \setcounter{equation}{0}
 \setcounter{enumi}{0}
 \setcounter{enumii}{0}
@@ -57,18 +37,11 @@
 \setcounter{paragraph}{0}
 \setcounter{subparagraph}{0}
 \setcounter{figure}{0}
-\setcounter{table}{26}
-\setcounter{NAT@ctr}{0}
+\setcounter{table}{0}
 \setcounter{float@type}{8}
+\setcounter{lstlisting}{0}
 \setcounter{lstnumber}{1}
 \setcounter{Item}{0}
 \setcounter{Hfootnote}{0}
-\setcounter{bookmark@seq@number}{77}
-\setcounter{lofdepth}{1}
-\setcounter{lotdepth}{1}
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-\setcounter{LT@chunks}{1}
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 \setcounter{section@level}{3}
 }