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[jabaws.git] / binaries / src / ViennaRNA / doc / latex / index.tex

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+\par
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+\subsection*{A Library for folding and comparing R\-N\-A secondary structures}
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+
+
+\par
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+
+\begin{DoxyDate}{Date}
+1994-\/2012 
+\end{DoxyDate}
+\begin{DoxyAuthor}{Authors}
+Ivo Hofacker, Peter Stadler, Ronny Lorenz and many more
+\end{DoxyAuthor}
+\subsubsection*{Table of Contents}
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+
+
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+\begin{DoxyItemize}
+\item \hyperlink{index_mp_intro}{Introduction} \item \hyperlink{group__folding__routines}{R\-N\-A Secondary Structure Folding} \item \hyperlink{mp_parse}{Parsing and Comparing -\/ Functions to Manipulate Structures} \item \hyperlink{mp_utils}{Utilities -\/ Odds and Ends} \item \hyperlink{mp_example}{Example -\/ A Small Example Program} \item mp\-\_\-ref\end{DoxyItemize}
+
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+\hypertarget{index_mp_intro}{}\section{Introduction}\label{index_mp_intro}
+The core of the Vienna R\-N\-A Package (\cite{lorenz:2011},\cite{hofacker:1994}) is formed by a collection of routines for the prediction and comparison of R\-N\-A secondary structures. These routines can be accessed through stand-\/alone programs, such as R\-N\-Afold, R\-N\-Adistance etc., which should be sufficient for most users. For those who wish to develop their own programs we provide a library which can be linked to your own code.
+
+This document describes the library and will be primarily useful to programmers. However, it also contains details about the implementation that may be of interest to advanced users. The stand-\/alone programs are described in separate man pages. The latest version of the package including source code and html versions of the documentation can be found at \par
+\par
+ \href{http://www.tbi.univie.ac.at/~ivo/RNA/}{\tt http\-://www.\-tbi.\-univie.\-ac.\-at/$\sim$ivo/\-R\-N\-A/} 
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