JWS-117 Compiled all tools with ./compilebin.sh and some were missing related files.

[jabaws.git] / binaries / src / ViennaRNA / doc / latex / main.tex

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+\par
+
+
+
+
+\subsection*{A Library for folding and comparing RNA secondary structures}
+
+
+
+\par
+
+
+\begin{DoxyDate}{Date}
+1994-\/2012 
+\end{DoxyDate}
+\begin{DoxyAuthor}{Authors}
+Ivo Hofacker, Peter Stadler, Ronny Lorenz and many more
+\end{DoxyAuthor}
+\subsubsection*{Table of Contents}
+
+
+
+
+
+\begin{DoxyItemize}
+\item \hyperlink{main_mp_intro}{Introduction} \item \hyperlink{group__folding__routines}{RNA Secondary Structure Folding} \item \hyperlink{mp_parse}{Parsing and Comparing -\/ Functions to Manipulate Structures} \item \hyperlink{mp_utils}{Utilities -\/ Odds and Ends} \item \hyperlink{mp_example}{Example -\/ A Small Example Program} \item mp\_\-ref\end{DoxyItemize}
+
+
+\hypertarget{main_mp_intro}{}\section{Introduction}\label{main_mp_intro}
+The core of the Vienna RNA Package ( lorenz:2011,  hofacker:1994) is formed by a collection of routines for the prediction and comparison of RNA secondary structures. These routines can be accessed through stand-\/alone programs, such as RNAfold, RNAdistance etc., which should be sufficient for most users. For those who wish to develop their own programs we provide a library which can be linked to your own code.
+
+This document describes the library and will be primarily useful to programmers. However, it also contains details about the implementation that may be of interest to advanced users. The stand-\/alone programs are described in separate man pages. The latest version of the package including source code and html versions of the documentation can be found at \par
+\par
+ \href{http://www.tbi.univie.ac.at/~ivo/RNA/}{\tt http://www.tbi.univie.ac.at/$\sim$ivo/RNA/} 
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