JWS-117 Compiled all tools with ./compilebin.sh and some were missing related files.

[jabaws.git] / binaries / src / ViennaRNA / doc / latex / move__set_8h_source.tex

diff --git a/binaries/src/ViennaRNA/doc/latex/move__set_8h_source.tex b/binaries/src/ViennaRNA/doc/latex/move__set_8h_source.tex
index c749e6d..244f028 100644 (file)
--- a/binaries/src/ViennaRNA/doc/latex/move__set_8h_source.tex
+++ b/binaries/src/ViennaRNA/doc/latex/move__set_8h_source.tex
@@ -1,8 +1,9 @@
-\hypertarget{move__set_8h}{\section{move\-\_\-set.\-h}
-\label{move__set_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/move\-\_\-set.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/move\-\_\-set.\-h}}
+\hypertarget{move__set_8h_source}{
+\section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/move\_\-set.h}
 }
 
-\begin{DoxyCode}
+
+\begin{footnotesize}\begin{alltt}
 00001 \textcolor{preprocessor}{#ifndef \_\_MOVE\_SET\_H}
 00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_MOVE\_SET\_H}
 00003 \textcolor{preprocessor}{}
@@ -10,25 +11,26 @@
 \hypertarget{move__set_8h_source_l00005}{}\hyperlink{structstruct__en}{00005} \textcolor{keyword}{typedef} \textcolor{keyword}{struct }\_struct\_en\{
 00006   \textcolor{keywordtype}{int} energy;        \textcolor{comment}{/* energy in 10kcal/mol*/}
 00007   \textcolor{keywordtype}{short} *structure;  \textcolor{comment}{/* structure in energy\_of\_move format*/}
-00008 \} \hyperlink{structstruct__en}{struct\_en};
+00008 \} \hyperlink{structstruct__en}{struct_en};
 00009 
 00010 \textcolor{comment}{/* prints structure*/}
-00011 \textcolor{keywordtype}{void} print\_stren(FILE *out, \hyperlink{structstruct__en}{struct\_en} *str);
+00011 \textcolor{keywordtype}{void} print\_stren(FILE *out, \hyperlink{structstruct__en}{struct_en} *str);
 00012 \textcolor{keywordtype}{void} print\_str(FILE *out, \textcolor{keywordtype}{short} *str);
 00013 
 00014 \textcolor{comment}{/* copying functions*/}
 00015 \textcolor{keywordtype}{void} copy\_arr(\textcolor{keywordtype}{short} *dest, \textcolor{keywordtype}{short} *src); \textcolor{comment}{/*just copy*/}
 00016 \textcolor{keywordtype}{short} *allocopy(\textcolor{keywordtype}{short} *src);            \textcolor{comment}{/*copy and make space*/}
 00017 
-00018 \textcolor{comment}{/* walking methods (verbose\_lvl 0-2, shifts = use shift moves? noLP = no lone pairs? (not compatible with
-       shifts))}
+00018 \textcolor{comment}{/* walking methods (verbose\_lvl 0-2, shifts = use shift moves? noLP = no lone pai
+      rs? (not compatible with shifts))}
 00019 \textcolor{comment}{    input:    seq - sequence}
 00020 \textcolor{comment}{              ptable - structure encoded with make\_pair\_table() from pair\_mat.h}
 00021 \textcolor{comment}{              s, s1 - sequence encoded with encode\_sequence from pair\_mat.h}
 00022 \textcolor{comment}{    methods:  deepest - lowest energy structure is used}
 00023 \textcolor{comment}{              first - first found lower energy structure is used}
 00024 \textcolor{comment}{              rand - random lower energy structure is used}
-00025 \textcolor{comment}{    returns local minima structure in ptable and its energy in 10kcal/mol as output */}
+00025 \textcolor{comment}{    returns local minima structure in ptable and its energy in 10kcal/mol as outp
+      ut */}
 00026 
 00027 \textcolor{keywordtype}{int} move\_deepest( \textcolor{keywordtype}{char} *seq,
 00028                   \textcolor{keywordtype}{short} *ptable,
@@ -51,12 +53,13 @@
 00045                 \textcolor{keywordtype}{int} verbosity\_level);
 00046 
 00047 
-00048 \textcolor{comment}{/* browse\_neighbours and do funct function on each of them (used mainly for user specified flooding)}
+00048 \textcolor{comment}{/* browse\_neighbours and do funct function on each of them (used mainly for user 
+      specified flooding)}
 00049 \textcolor{comment}{    input:    seq - sequence}
 00050 \textcolor{comment}{              ptable - structure encoded with make\_pair\_table() from pair\_mat.h}
 00051 \textcolor{comment}{              s, s1 - sequence encoded with encode\_sequence from pair\_mat.h}
-00052 \textcolor{comment}{              funct - function (moved structure, current structure (or altered by funct)) to do with every
-       structure in neigbourhood}
+00052 \textcolor{comment}{              funct - function (moved structure, current structure (or altered by
+       funct)) to do with every structure in neigbourhood}
 00053 \textcolor{comment}{    returns energy of the structure funct sets as second argument*/}
 00054 \textcolor{keywordtype}{int} browse\_neighs( \textcolor{keywordtype}{char} *seq,
 00055                    \textcolor{keywordtype}{short} *ptable,
@@ -65,7 +68,7 @@
 00058                    \textcolor{keywordtype}{int} verbosity\_level,
 00059                    \textcolor{keywordtype}{int} shifts,
 00060                    \textcolor{keywordtype}{int} noLP,
-00061                    \textcolor{keywordtype}{int} (*funct) (\hyperlink{structstruct__en}{struct\_en}*, \hyperlink{structstruct__en}{struct\_en}*));
+00061                    \textcolor{keywordtype}{int} (*funct) (\hyperlink{structstruct__en}{struct_en}*, \hyperlink{structstruct__en}{struct_en}*));
 00062 
 00063 \textcolor{preprocessor}{#endif}
-\end{DoxyCode}
+\end{alltt}\end{footnotesize}