Add missing doc files

[jabaws.git] / binaries / src / ViennaRNA / doc / latex / params_8h_source.tex

diff --git a/binaries/src/ViennaRNA/doc/latex/params_8h_source.tex b/binaries/src/ViennaRNA/doc/latex/params_8h_source.tex
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+\hypertarget{params_8h}{\section{params.\-h}
+\label{params_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/params.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/params.\-h}}
+}
+
+\begin{DoxyCode}
+00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_PARAMS\_H\_\_}
+00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_PARAMS\_H\_\_}
+00003 \textcolor{preprocessor}{}
+00004 \textcolor{preprocessor}{#include "\hyperlink{energy__const_8h}{energy\_const.h}"}
+00005 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data\_structures.h}"}
+00006 
+00007 \textcolor{preprocessor}{#ifdef \_\_GNUC\_\_}
+00008 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define DEPRECATED(func) func \_\_attribute\_\_ ((deprecated))}
+00009 \textcolor{preprocessor}{}\textcolor{preprocessor}{#else}
+00010 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define DEPRECATED(func) func}
+00011 \textcolor{preprocessor}{}\textcolor{preprocessor}{#endif}
+00012 \textcolor{preprocessor}{}
+00036 \hyperlink{structparamT}{paramT} *\hyperlink{group__energy__parameters_ga527ef619cd8210b84d5d53be1e0e29b6}{scale\_parameters}(\textcolor{keywordtype}{void});
+00037 
+00052 \hyperlink{structparamT}{paramT} *\hyperlink{group__energy__parameters_gac2f3ca440b7eaf4d999fb27da949fe72}{get\_scaled\_parameters}(\textcolor{keywordtype}{double} temperature,
+00053                               \hyperlink{structmodel__detailsT}{model\_detailsT} md);
+00054 
+00055 \hyperlink{structparamT}{paramT} *get\_parameter\_copy(\hyperlink{structparamT}{paramT} *par);
+00056 
+00063 \hyperlink{structpf__paramT}{pf\_paramT} *\hyperlink{group__energy__parameters_gab85f6b6da051f380371deb0d8921bdba}{get\_scaled\_pf\_parameters}(\textcolor{keywordtype}{void});
+00064 
+00088 \hyperlink{structpf__paramT}{pf\_paramT} *\hyperlink{group__energy__parameters_ga6fc2f3eef5a3024d44963ac59a42e39d}{get\_boltzmann\_factors}( \textcolor{keywordtype}{double} temperature,
+00089                                   \textcolor{keywordtype}{double} betaScale,
+00090                                   \hyperlink{structmodel__detailsT}{model\_detailsT} md,
+00091                                   \textcolor{keywordtype}{double} pf\_scale);
+00092 
+00101 \hyperlink{structpf__paramT}{pf\_paramT} *\hyperlink{group__energy__parameters_gacba212326a051734797e65987260fdd0}{get\_boltzmann\_factor\_copy}(\hyperlink{structpf__paramT}{pf\_paramT} *parameters);
+00102 
+00108 \hyperlink{structpf__paramT}{pf\_paramT} *\hyperlink{group__energy__parameters_gaa6a4297a2b91d6f7ae47dd61ca1862a0}{get\_scaled\_alipf\_parameters}(\textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} n\_seq);
+00109 
+00116 PUBLIC \hyperlink{structpf__paramT}{pf\_paramT} *\hyperlink{group__energy__parameters_gaaa049a8c9f1c2ed4398cb1b5a3d65a66}{get\_boltzmann\_factors\_ali}(\textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} n\_seq,
+00117                                             \textcolor{keywordtype}{double} temperature,
+00118                                             \textcolor{keywordtype}{double} betaScale,
+00119                                             \hyperlink{structmodel__detailsT}{model\_detailsT} md,
+00120                                             \textcolor{keywordtype}{double} pf\_scale);
+00121 
+00126 DEPRECATED(\hyperlink{structparamT}{paramT}     *copy\_parameters(\textcolor{keywordtype}{void}));
+00127 DEPRECATED(\hyperlink{structparamT}{paramT}     *set\_parameters(\hyperlink{structparamT}{paramT} *dest));
+00128 DEPRECATED(\hyperlink{structpf__paramT}{pf\_paramT}  *scale\_pf\_parameters(\textcolor{keywordtype}{void}));
+00129 DEPRECATED(\hyperlink{structpf__paramT}{pf\_paramT}  *copy\_pf\_param(\textcolor{keywordtype}{void}));
+00130 DEPRECATED(\hyperlink{structpf__paramT}{pf\_paramT}  *set\_pf\_param(\hyperlink{structparamT}{paramT} *dest));
+00131 
+00132 
+00133 
+00134 \textcolor{preprocessor}{#endif}
+\end{DoxyCode}