JWS-117 Compiled all tools with ./compilebin.sh and some were missing related files.

[jabaws.git] / binaries / src / ViennaRNA / doc / latex / part__func__co_8h_source.tex

diff --git a/binaries/src/ViennaRNA/doc/latex/part__func__co_8h_source.tex b/binaries/src/ViennaRNA/doc/latex/part__func__co_8h_source.tex
index 43eff8d..4e64395 100644 (file)
--- a/binaries/src/ViennaRNA/doc/latex/part__func__co_8h_source.tex
+++ b/binaries/src/ViennaRNA/doc/latex/part__func__co_8h_source.tex
@@ -1,12 +1,13 @@
-\hypertarget{part__func__co_8h}{\section{part\-\_\-func\-\_\-co.\-h}
-\label{part__func__co_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/part\-\_\-func\-\_\-co.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/part\-\_\-func\-\_\-co.\-h}}
+\hypertarget{part__func__co_8h_source}{
+\section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/part\_\-func\_\-co.h}
 }
 
-\begin{DoxyCode}
+
+\begin{footnotesize}\begin{alltt}
 00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_PART\_FUNC\_CO\_H\_\_}
 00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_PART\_FUNC\_CO\_H\_\_}
 00003 \textcolor{preprocessor}{}
-00004 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data\_structures.h}"}
+00004 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data_structures.h}"}
 00005 
 00006 \textcolor{preprocessor}{#ifdef \_\_GNUC\_\_}
 00007 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define DEPRECATED(func) func \_\_attribute\_\_ ((deprecated))}
@@ -16,27 +17,27 @@
 00011 \textcolor{preprocessor}{}
 00055 \textcolor{keyword}{extern} \textcolor{keywordtype}{int}    \hyperlink{group__pf__cofold_gaff27888c4088cc1f60fd59cbd589474c}{mirnatog};
 00056 
-00060 \textcolor{keyword}{extern} \textcolor{keywordtype}{double} \hyperlink{group__pf__cofold_gac2d1851a710a8561390861155ca988fe}{F\_monomer}[2];
+00060 \textcolor{keyword}{extern} \textcolor{keywordtype}{double} \hyperlink{group__pf__cofold_gac2d1851a710a8561390861155ca988fe}{F_monomer}[2];
 00061 
-00080 \hyperlink{structcofoldF}{cofoldF} \hyperlink{group__pf__cofold_gaa86a5f998789ed71813d23d7307a791b}{co\_pf\_fold}( \textcolor{keywordtype}{char} *sequence,
+00080 \hyperlink{structcofoldF}{cofoldF} \hyperlink{group__pf__cofold_gaa86a5f998789ed71813d23d7307a791b}{co_pf_fold}( \textcolor{keywordtype}{char} *sequence,
 00081                     \textcolor{keywordtype}{char} *structure);
 00082 
-00100 \hyperlink{structcofoldF}{cofoldF} \hyperlink{group__pf__cofold_gabd873b450832ab5f21101fc5ab354d21}{co\_pf\_fold\_par}( \textcolor{keywordtype}{char} *sequence,
+00100 \hyperlink{structcofoldF}{cofoldF} \hyperlink{group__pf__cofold_gabd873b450832ab5f21101fc5ab354d21}{co_pf_fold_par}( \textcolor{keywordtype}{char} *sequence,
 00101                         \textcolor{keywordtype}{char} *structure,
-00102                         \hyperlink{structpf__paramT}{pf\_paramT} *parameters,
+00102                         \hyperlink{structpf__paramT}{pf_paramT} *parameters,
 00103                         \textcolor{keywordtype}{int} calculate\_bppm,
 00104                         \textcolor{keywordtype}{int} is\_constrained);
 00105 
-00115 FLT\_OR\_DBL *\hyperlink{group__pf__cofold_ga11f0252c1d2c4697253ff4b5bd392d3c}{export\_co\_bppm}(\textcolor{keywordtype}{void});
+00115 FLT\_OR\_DBL *\hyperlink{group__pf__cofold_ga11f0252c1d2c4697253ff4b5bd392d3c}{export_co_bppm}(\textcolor{keywordtype}{void});
 00116 
-00120 \textcolor{keywordtype}{void}    \hyperlink{group__pf__cofold_gade3ce34ae8214811374b1d28a40dc247}{free\_co\_pf\_arrays}(\textcolor{keywordtype}{void});
+00120 \textcolor{keywordtype}{void}    \hyperlink{group__pf__cofold_gade3ce34ae8214811374b1d28a40dc247}{free_co_pf_arrays}(\textcolor{keywordtype}{void});
 00121 
-00136 \textcolor{keywordtype}{void}    \hyperlink{group__pf__cofold_ga6e0f36c1f9b7d9dd4bfbad914c1119e5}{update\_co\_pf\_params}(\textcolor{keywordtype}{int} length);
+00136 \textcolor{keywordtype}{void}    \hyperlink{group__pf__cofold_ga6e0f36c1f9b7d9dd4bfbad914c1119e5}{update_co_pf_params}(\textcolor{keywordtype}{int} length);
 00137 
-00157 \textcolor{keywordtype}{void}    \hyperlink{group__pf__cofold_ga117d880df45bef444d5e2785ffa40a53}{update\_co\_pf\_params\_par}(\textcolor{keywordtype}{int} length,
-00158                                 \hyperlink{structpf__paramT}{pf\_paramT} *parameters);
+00157 \textcolor{keywordtype}{void}    \hyperlink{group__pf__cofold_ga117d880df45bef444d5e2785ffa40a53}{update_co_pf_params_par}(\textcolor{keywordtype}{int} length,
+00158                                 \hyperlink{structpf__paramT}{pf_paramT} *parameters);
 00159 
-00177 \textcolor{keywordtype}{void}    \hyperlink{group__pf__cofold_ga15ae04ac5ab84e876dcf0093120cb617}{compute\_probabilities}(\textcolor{keywordtype}{double} FAB,
+00177 \textcolor{keywordtype}{void}    \hyperlink{group__pf__cofold_ga15ae04ac5ab84e876dcf0093120cb617}{compute_probabilities}(\textcolor{keywordtype}{double} FAB,
 00178                               \textcolor{keywordtype}{double} FEA,
 00179                               \textcolor{keywordtype}{double} FEB,
 00180                               \textcolor{keyword}{struct} \hyperlink{structplist}{plist}  *prAB,
@@ -44,7 +45,7 @@
 00182                               \textcolor{keyword}{struct} \hyperlink{structplist}{plist}  *prB,
 00183                               \textcolor{keywordtype}{int} Alength);
 00184 
-00203 \hyperlink{structConcEnt}{ConcEnt} *\hyperlink{group__pf__cofold_ga5545cb936ac4ff93c7d699d46e72e8c7}{get\_concentrations}(\textcolor{keywordtype}{double} FEAB,
+00203 \hyperlink{structConcEnt}{ConcEnt} *\hyperlink{group__pf__cofold_ga5545cb936ac4ff93c7d699d46e72e8c7}{get_concentrations}(\textcolor{keywordtype}{double} FEAB,
 00204                             \textcolor{keywordtype}{double} FEAA,
 00205                             \textcolor{keywordtype}{double} FEBB,
 00206                             \textcolor{keywordtype}{double} FEA,
@@ -58,10 +59,10 @@
 00218 \textcolor{comment}{#################################################}
 00219 \textcolor{comment}{*/}
 00220 
-00226 DEPRECATED(\hyperlink{structplist}{plist}  *\hyperlink{part__func__co_8h_a334de3c96e2186abfbdc0eaea6d08b14}{get\_plist}( \textcolor{keyword}{struct} \hyperlink{structplist}{plist} *pl,
+00226 DEPRECATED(\hyperlink{structplist}{plist}  *\hyperlink{part__func__co_8h_a334de3c96e2186abfbdc0eaea6d08b14}{get_plist}( \textcolor{keyword}{struct} \hyperlink{structplist}{plist} *pl,
 00227                               \textcolor{keywordtype}{int} length,
 00228                               \textcolor{keywordtype}{double} cut\_off));
-00233 DEPRECATED(\textcolor{keywordtype}{void}   \hyperlink{part__func__co_8h_aa12dda9dd6179cdd22bcce87c0682c07}{init\_co\_pf\_fold}(\textcolor{keywordtype}{int} length));
+00233 DEPRECATED(\textcolor{keywordtype}{void}   \hyperlink{part__func__co_8h_aa12dda9dd6179cdd22bcce87c0682c07}{init_co_pf_fold}(\textcolor{keywordtype}{int} length));
 00234 
 00235 \textcolor{preprocessor}{#endif}
-\end{DoxyCode}
+\end{alltt}\end{footnotesize}