Add missing doc files

[jabaws.git] / binaries / src / ViennaRNA / doc / latex / part__func__up_8h_source.tex

diff --git a/binaries/src/ViennaRNA/doc/latex/part__func__up_8h_source.tex b/binaries/src/ViennaRNA/doc/latex/part__func__up_8h_source.tex
new file mode 100644 (file)
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+++ b/binaries/src/ViennaRNA/doc/latex/part__func__up_8h_source.tex
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+\hypertarget{part__func__up_8h}{\section{part\-\_\-func\-\_\-up.\-h}
+\label{part__func__up_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/part\-\_\-func\-\_\-up.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/part\-\_\-func\-\_\-up.\-h}}
+}
+
+\begin{DoxyCode}
+00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_PART\_FUNC\_UP\_H\_\_}
+00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_PART\_FUNC\_UP\_H\_\_}
+00003 \textcolor{preprocessor}{}
+00004 \textcolor{preprocessor}{#include "\hyperlink{data__structures_8h}{data\_structures.h}"}
+00005 
+00006 \textcolor{preprocessor}{#define   RNA\_UP\_MODE\_1   1U}
+00007 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define   RNA\_UP\_MODE\_2   2U}
+00008 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define   RNA\_UP\_MODE\_3   4U}
+00009 \textcolor{preprocessor}{}
+00055 \hyperlink{structpu__contrib}{pu\_contrib} *\hyperlink{group__up__cofold_ga5b4ee40e190d2f633cd01cf0d2fe93cf}{pf\_unstru}(\textcolor{keywordtype}{char} *sequence,
+00056                       \textcolor{keywordtype}{int} max\_w);
+00057 
+00100 \hyperlink{structinteract}{interact} *\hyperlink{group__up__cofold_ga1aa0aa02bc3a724f87360c03097afd00}{pf\_interact}(\textcolor{keyword}{const} \textcolor{keywordtype}{char} *s1,
+00101                       \textcolor{keyword}{const} \textcolor{keywordtype}{char} *s2,
+00102                       \hyperlink{structpu__contrib}{pu\_contrib} *p\_c,
+00103                       \hyperlink{structpu__contrib}{pu\_contrib} *p\_c2,
+00104                       \textcolor{keywordtype}{int} max\_w,
+00105                       \textcolor{keywordtype}{char} *cstruc,
+00106                       \textcolor{keywordtype}{int} incr3,
+00107                       \textcolor{keywordtype}{int} incr5);
+00108 
+00112 \textcolor{keywordtype}{void} \hyperlink{group__up__cofold_gadde308fd5f696dc271b1532aa96fd12f}{free\_interact}(\hyperlink{structinteract}{interact} *pin);
+00113 
+00117 \textcolor{keywordtype}{int} Up\_plot(\hyperlink{structpu__contrib}{pu\_contrib} *p\_c,
+00118             \hyperlink{structpu__contrib}{pu\_contrib} *p\_c\_sh,
+00119             \hyperlink{structinteract}{interact} *pint,
+00120             \textcolor{keywordtype}{char} *ofile,
+00121             \textcolor{keywordtype}{int} **unpaired\_values,
+00122             \textcolor{keywordtype}{char} *select\_contrib,
+00123             \textcolor{keywordtype}{char} *head,
+00124             \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} mode);
+00125 
+00129 \hyperlink{structpu__contrib}{pu\_contrib}  *get\_pu\_contrib\_struct( \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} n,
+00130                                     \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} w);
+00131 
+00135 \textcolor{keywordtype}{void}        \hyperlink{group__up__cofold_gac20bd61824981d45ce0dc9934aa56df8}{free\_pu\_contrib\_struct}(\hyperlink{structpu__contrib}{pu\_contrib} *pu);
+00136 
+00141 \textcolor{preprocessor}{#endif}
+\end{DoxyCode}