JWS-117 Compiled all tools with ./compilebin.sh and some were missing related files.

[jabaws.git] / binaries / src / ViennaRNA / doc / latex / stringdist_8h.tex

diff --git a/binaries/src/ViennaRNA/doc/latex/stringdist_8h.tex b/binaries/src/ViennaRNA/doc/latex/stringdist_8h.tex
index a33fc78..71d2e9f 100644 (file)
--- a/binaries/src/ViennaRNA/doc/latex/stringdist_8h.tex
+++ b/binaries/src/ViennaRNA/doc/latex/stringdist_8h.tex
@@ -1,70 +1,53 @@
-\hypertarget{stringdist_8h}{\section{/home/asherstnev/\-Projects/\-Java.projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/stringdist.h File Reference}
-\label{stringdist_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/stringdist.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/stringdist.\-h}}
+\hypertarget{stringdist_8h}{
+\section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/stringdist.h File Reference}
+\label{stringdist_8h}\index{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/stringdist.h@{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/stringdist.h}}
 }
 
 
 Functions for String Alignment.  
-
-
-Include dependency graph for stringdist.\-h\-:
-\nopagebreak
+Include dependency graph for stringdist.h:\nopagebreak
 \begin{figure}[H]
 \begin{center}
 \leavevmode
-\includegraphics[width=250pt]{stringdist_8h__incl}
+\includegraphics[width=215pt]{stringdist_8h__incl}
 \end{center}
 \end{figure}
 \subsection*{Functions}
 \begin{DoxyCompactItemize}
 \item 
-\hyperlink{structswString}{sw\-String} $\ast$ \hyperlink{stringdist_8h_a3125991b3a403b3f89230474deb3f22e}{Make\-\_\-sw\-String} (char $\ast$string)
-\begin{DoxyCompactList}\small\item\em Convert a structure into a format suitable for \hyperlink{stringdist_8h_a89e3c335ef17780576d7c0e713830db9}{string\-\_\-edit\-\_\-distance()}. \end{DoxyCompactList}\item 
-float \hyperlink{stringdist_8h_a89e3c335ef17780576d7c0e713830db9}{string\-\_\-edit\-\_\-distance} (\hyperlink{structswString}{sw\-String} $\ast$T1, \hyperlink{structswString}{sw\-String} $\ast$T2)
-\begin{DoxyCompactList}\small\item\em Calculate the string edit distance of T1 and T2. \end{DoxyCompactList}\end{DoxyCompactItemize}
+\hyperlink{structswString}{swString} $\ast$ \hyperlink{stringdist_8h_a3125991b3a403b3f89230474deb3f22e}{Make\_\-swString} (char $\ast$string)
+\begin{DoxyCompactList}\small\item\em Convert a structure into a format suitable for \hyperlink{stringdist_8h_a89e3c335ef17780576d7c0e713830db9}{string\_\-edit\_\-distance()}. \item\end{DoxyCompactList}\item 
+float \hyperlink{stringdist_8h_a89e3c335ef17780576d7c0e713830db9}{string\_\-edit\_\-distance} (\hyperlink{structswString}{swString} $\ast$T1, \hyperlink{structswString}{swString} $\ast$T2)
+\begin{DoxyCompactList}\small\item\em Calculate the string edit distance of T1 and T2. \item\end{DoxyCompactList}\end{DoxyCompactItemize}
 
 
 \subsection{Detailed Description}
 Functions for String Alignment. 
 
 \subsection{Function Documentation}
-\hypertarget{stringdist_8h_a3125991b3a403b3f89230474deb3f22e}{\index{stringdist.\-h@{stringdist.\-h}!Make\-\_\-sw\-String@{Make\-\_\-sw\-String}}
-\index{Make\-\_\-sw\-String@{Make\-\_\-sw\-String}!stringdist.h@{stringdist.\-h}}
-\subsubsection[{Make\-\_\-sw\-String}]{\setlength{\rightskip}{0pt plus 5cm}{\bf sw\-String}$\ast$ Make\-\_\-sw\-String (
-\begin{DoxyParamCaption}
-\item[{char $\ast$}]{string}
-\end{DoxyParamCaption}
-)}}\label{stringdist_8h_a3125991b3a403b3f89230474deb3f22e}
-
-
-Convert a structure into a format suitable for \hyperlink{stringdist_8h_a89e3c335ef17780576d7c0e713830db9}{string\-\_\-edit\-\_\-distance()}. 
+\hypertarget{stringdist_8h_a3125991b3a403b3f89230474deb3f22e}{
+\index{stringdist.h@{stringdist.h}!Make\_\-swString@{Make\_\-swString}}
+\index{Make\_\-swString@{Make\_\-swString}!stringdist.h@{stringdist.h}}
+\subsubsection[{Make\_\-swString}]{\setlength{\rightskip}{0pt plus 5cm}{\bf swString}$\ast$ Make\_\-swString (char $\ast$ {\em string})}}
+\label{stringdist_8h_a3125991b3a403b3f89230474deb3f22e}
 
 
+Convert a structure into a format suitable for \hyperlink{stringdist_8h_a89e3c335ef17780576d7c0e713830db9}{string\_\-edit\_\-distance()}. 
 \begin{DoxyParams}{Parameters}
-{\em string} & \\
-\hline
-\end{DoxyParams}
+\item[{\em string}]\end{DoxyParams}
 \begin{DoxyReturn}{Returns}
 
 \end{DoxyReturn}
-\hypertarget{stringdist_8h_a89e3c335ef17780576d7c0e713830db9}{\index{stringdist.\-h@{stringdist.\-h}!string\-\_\-edit\-\_\-distance@{string\-\_\-edit\-\_\-distance}}
-\index{string\-\_\-edit\-\_\-distance@{string\-\_\-edit\-\_\-distance}!stringdist.h@{stringdist.\-h}}
-\subsubsection[{string\-\_\-edit\-\_\-distance}]{\setlength{\rightskip}{0pt plus 5cm}float string\-\_\-edit\-\_\-distance (
-\begin{DoxyParamCaption}
-\item[{{\bf sw\-String} $\ast$}]{T1, }
-\item[{{\bf sw\-String} $\ast$}]{T2}
-\end{DoxyParamCaption}
-)}}\label{stringdist_8h_a89e3c335ef17780576d7c0e713830db9}
+\hypertarget{stringdist_8h_a89e3c335ef17780576d7c0e713830db9}{
+\index{stringdist.h@{stringdist.h}!string\_\-edit\_\-distance@{string\_\-edit\_\-distance}}
+\index{string\_\-edit\_\-distance@{string\_\-edit\_\-distance}!stringdist.h@{stringdist.h}}
+\subsubsection[{string\_\-edit\_\-distance}]{\setlength{\rightskip}{0pt plus 5cm}float string\_\-edit\_\-distance ({\bf swString} $\ast$ {\em T1}, \/  {\bf swString} $\ast$ {\em T2})}}
+\label{stringdist_8h_a89e3c335ef17780576d7c0e713830db9}
 
 
 Calculate the string edit distance of T1 and T2. 
-
-
 \begin{DoxyParams}{Parameters}
-{\em T1} & \\
-\hline
-{\em T2} & \\
-\hline
-\end{DoxyParams}
+\item[{\em T1}]\item[{\em T2}]\end{DoxyParams}
 \begin{DoxyReturn}{Returns}
 
 \end{DoxyReturn}