JWS-117 Compiled all tools with ./compilebin.sh and some were missing related files.

[jabaws.git] / binaries / src / ViennaRNA / doc / latex / structinteract.tex

diff --git a/binaries/src/ViennaRNA/doc/latex/structinteract.tex b/binaries/src/ViennaRNA/doc/latex/structinteract.tex
index d8881f6..ea561ee 100644 (file)
--- a/binaries/src/ViennaRNA/doc/latex/structinteract.tex
+++ b/binaries/src/ViennaRNA/doc/latex/structinteract.tex
@@ -1,38 +1,57 @@
-\hypertarget{structinteract}{\section{interact Struct Reference}
+\hypertarget{structinteract}{
+\section{interact Struct Reference}
 \label{structinteract}\index{interact@{interact}}
 }
 \subsection*{Data Fields}
 \begin{DoxyCompactItemize}
 \item 
-\hypertarget{structinteract_a1fc8b3860c083f164daa9712690a3a56}{double $\ast$ \hyperlink{structinteract_a1fc8b3860c083f164daa9712690a3a56}{Pi}}\label{structinteract_a1fc8b3860c083f164daa9712690a3a56}
-
-\begin{DoxyCompactList}\small\item\em probabilities of interaction \end{DoxyCompactList}\item 
-\hypertarget{structinteract_a54f8183542fff4c32ab7ace49a16c02c}{double $\ast$ \hyperlink{structinteract_a54f8183542fff4c32ab7ace49a16c02c}{Gi}}\label{structinteract_a54f8183542fff4c32ab7ace49a16c02c}
-
-\begin{DoxyCompactList}\small\item\em free energies of interaction \end{DoxyCompactList}\item 
-\hypertarget{structinteract_ad58303190f9e085c3ab59890cbf61223}{double \hyperlink{structinteract_ad58303190f9e085c3ab59890cbf61223}{Gikjl}}\label{structinteract_ad58303190f9e085c3ab59890cbf61223}
-
-\begin{DoxyCompactList}\small\item\em full free energy for interaction between \mbox{[}k,i\mbox{]} k$<$i in longer seq and \mbox{[}j,l\mbox{]} j$<$l in shorter seq \end{DoxyCompactList}\item 
-\hypertarget{structinteract_a41793812abae560805414761fec398fe}{double \hyperlink{structinteract_a41793812abae560805414761fec398fe}{Gikjl\-\_\-wo}}\label{structinteract_a41793812abae560805414761fec398fe}
-
-\begin{DoxyCompactList}\small\item\em Gikjl without contributions for prob\-\_\-unpaired. \end{DoxyCompactList}\item 
-\hypertarget{structinteract_ab6d031a21388be8763b75ea74c937f17}{int \hyperlink{structinteract_ab6d031a21388be8763b75ea74c937f17}{i}}\label{structinteract_ab6d031a21388be8763b75ea74c937f17}
-
-\begin{DoxyCompactList}\small\item\em k$<$i in longer seq \end{DoxyCompactList}\item 
-\hypertarget{structinteract_a61e457fbf943d57364be6ddf1b4e7b8a}{int \hyperlink{structinteract_a61e457fbf943d57364be6ddf1b4e7b8a}{k}}\label{structinteract_a61e457fbf943d57364be6ddf1b4e7b8a}
-
-\begin{DoxyCompactList}\small\item\em k$<$i in longer seq \end{DoxyCompactList}\item 
-\hypertarget{structinteract_a7555cb6363d1479341eb72b9c087aa34}{int \hyperlink{structinteract_a7555cb6363d1479341eb72b9c087aa34}{j}}\label{structinteract_a7555cb6363d1479341eb72b9c087aa34}
-
-\begin{DoxyCompactList}\small\item\em j$<$l in shorter seq \end{DoxyCompactList}\item 
-\hypertarget{structinteract_a030ab45056342e12cb3955e4defd3904}{int \hyperlink{structinteract_a030ab45056342e12cb3955e4defd3904}{l}}\label{structinteract_a030ab45056342e12cb3955e4defd3904}
-
-\begin{DoxyCompactList}\small\item\em j$<$l in shorter seq \end{DoxyCompactList}\item 
-\hypertarget{structinteract_ac9fcb5dca54ec5faa76e02b6488b9524}{int \hyperlink{structinteract_ac9fcb5dca54ec5faa76e02b6488b9524}{length}}\label{structinteract_ac9fcb5dca54ec5faa76e02b6488b9524}
-
-\begin{DoxyCompactList}\small\item\em length of longer sequence \end{DoxyCompactList}\end{DoxyCompactItemize}
-
-
-The documentation for this struct was generated from the following file\-:\begin{DoxyCompactItemize}
+\hypertarget{structinteract_a1fc8b3860c083f164daa9712690a3a56}{
+double $\ast$ \hyperlink{structinteract_a1fc8b3860c083f164daa9712690a3a56}{Pi}}
+\label{structinteract_a1fc8b3860c083f164daa9712690a3a56}
+
+\begin{DoxyCompactList}\small\item\em probabilities of interaction \item\end{DoxyCompactList}\item 
+\hypertarget{structinteract_a54f8183542fff4c32ab7ace49a16c02c}{
+double $\ast$ \hyperlink{structinteract_a54f8183542fff4c32ab7ace49a16c02c}{Gi}}
+\label{structinteract_a54f8183542fff4c32ab7ace49a16c02c}
+
+\begin{DoxyCompactList}\small\item\em free energies of interaction \item\end{DoxyCompactList}\item 
+\hypertarget{structinteract_ad58303190f9e085c3ab59890cbf61223}{
+double \hyperlink{structinteract_ad58303190f9e085c3ab59890cbf61223}{Gikjl}}
+\label{structinteract_ad58303190f9e085c3ab59890cbf61223}
+
+\begin{DoxyCompactList}\small\item\em full free energy for interaction between \mbox{[}k,i\mbox{]} k$<$i in longer seq and \mbox{[}j,l\mbox{]} j$<$l in shorter seq \item\end{DoxyCompactList}\item 
+\hypertarget{structinteract_a41793812abae560805414761fec398fe}{
+double \hyperlink{structinteract_a41793812abae560805414761fec398fe}{Gikjl\_\-wo}}
+\label{structinteract_a41793812abae560805414761fec398fe}
+
+\begin{DoxyCompactList}\small\item\em Gikjl without contributions for prob\_\-unpaired. \item\end{DoxyCompactList}\item 
+\hypertarget{structinteract_ab6d031a21388be8763b75ea74c937f17}{
+int \hyperlink{structinteract_ab6d031a21388be8763b75ea74c937f17}{i}}
+\label{structinteract_ab6d031a21388be8763b75ea74c937f17}
+
+\begin{DoxyCompactList}\small\item\em k$<$i in longer seq \item\end{DoxyCompactList}\item 
+\hypertarget{structinteract_a61e457fbf943d57364be6ddf1b4e7b8a}{
+int \hyperlink{structinteract_a61e457fbf943d57364be6ddf1b4e7b8a}{k}}
+\label{structinteract_a61e457fbf943d57364be6ddf1b4e7b8a}
+
+\begin{DoxyCompactList}\small\item\em k$<$i in longer seq \item\end{DoxyCompactList}\item 
+\hypertarget{structinteract_a7555cb6363d1479341eb72b9c087aa34}{
+int \hyperlink{structinteract_a7555cb6363d1479341eb72b9c087aa34}{j}}
+\label{structinteract_a7555cb6363d1479341eb72b9c087aa34}
+
+\begin{DoxyCompactList}\small\item\em j$<$l in shorter seq \item\end{DoxyCompactList}\item 
+\hypertarget{structinteract_a030ab45056342e12cb3955e4defd3904}{
+int \hyperlink{structinteract_a030ab45056342e12cb3955e4defd3904}{l}}
+\label{structinteract_a030ab45056342e12cb3955e4defd3904}
+
+\begin{DoxyCompactList}\small\item\em j$<$l in shorter seq \item\end{DoxyCompactList}\item 
+\hypertarget{structinteract_ac9fcb5dca54ec5faa76e02b6488b9524}{
+int \hyperlink{structinteract_ac9fcb5dca54ec5faa76e02b6488b9524}{length}}
+\label{structinteract_ac9fcb5dca54ec5faa76e02b6488b9524}
+
+\begin{DoxyCompactList}\small\item\em length of longer sequence \item\end{DoxyCompactList}\end{DoxyCompactItemize}
+
+
+The documentation for this struct was generated from the following file:\begin{DoxyCompactItemize}
 \item 
-/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/\hyperlink{data__structures_8h}{data\-\_\-structures.\-h}\end{DoxyCompactItemize}
+/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/\hyperlink{data__structures_8h}{data\_\-structures.h}\end{DoxyCompactItemize}