JWS-117 Compiled all tools with ./compilebin.sh and some were missing related files.

[jabaws.git] / binaries / src / ViennaRNA / doc / latex / structpf__paramT.tex

diff --git a/binaries/src/ViennaRNA/doc/latex/structpf__paramT.tex b/binaries/src/ViennaRNA/doc/latex/structpf__paramT.tex
index 8d2562d..2e65b4c 100644 (file)
--- a/binaries/src/ViennaRNA/doc/latex/structpf__paramT.tex
+++ b/binaries/src/ViennaRNA/doc/latex/structpf__paramT.tex
@@ -1,50 +1,52 @@
-\hypertarget{structpf__paramT}{\section{pf\-\_\-param\-T Struct Reference}
-\label{structpf__paramT}\index{pf\-\_\-param\-T@{pf\-\_\-param\-T}}
+\hypertarget{structpf__paramT}{
+\section{pf\_\-paramT Struct Reference}
+\label{structpf__paramT}\index{pf\_\-paramT@{pf\_\-paramT}}
 }
 
 
 The datastructure that contains temperature scaled Boltzmann weights of the energy parameters.  
-
-
-
-
-Collaboration diagram for pf\-\_\-param\-T\-:
-\nopagebreak
+Collaboration diagram for pf\_\-paramT:\nopagebreak
 \begin{figure}[H]
 \begin{center}
 \leavevmode
-\includegraphics[width=183pt]{structpf__paramT__coll__graph}
+\includegraphics[width=152pt]{structpf__paramT__coll__graph}
 \end{center}
 \end{figure}
 \subsection*{Data Fields}
 \begin{DoxyCompactItemize}
 \item 
-\hypertarget{structpf__paramT_aef40322e7ca1adbd9b438aeda0352e8f}{double \hyperlink{structpf__paramT_aef40322e7ca1adbd9b438aeda0352e8f}{pf\-\_\-scale}}\label{structpf__paramT_aef40322e7ca1adbd9b438aeda0352e8f}
+\hypertarget{structpf__paramT_aef40322e7ca1adbd9b438aeda0352e8f}{
+double \hyperlink{structpf__paramT_aef40322e7ca1adbd9b438aeda0352e8f}{pf\_\-scale}}
+\label{structpf__paramT_aef40322e7ca1adbd9b438aeda0352e8f}
 
-\begin{DoxyCompactList}\small\item\em Scaling factor to avoid over-\//underflows. \end{DoxyCompactList}\item 
-\hypertarget{structpf__paramT_aa0e11e9f1f6e212640baf40d7195a014}{double \hyperlink{structpf__paramT_aa0e11e9f1f6e212640baf40d7195a014}{temperature}}\label{structpf__paramT_aa0e11e9f1f6e212640baf40d7195a014}
+\begin{DoxyCompactList}\small\item\em Scaling factor to avoid over-\//underflows. \item\end{DoxyCompactList}\item 
+\hypertarget{structpf__paramT_aa0e11e9f1f6e212640baf40d7195a014}{
+double \hyperlink{structpf__paramT_aa0e11e9f1f6e212640baf40d7195a014}{temperature}}
+\label{structpf__paramT_aa0e11e9f1f6e212640baf40d7195a014}
 
-\begin{DoxyCompactList}\small\item\em Temperature used for loop contribution scaling. \end{DoxyCompactList}\item 
+\begin{DoxyCompactList}\small\item\em Temperature used for loop contribution scaling. \item\end{DoxyCompactList}\item 
 double \hyperlink{structpf__paramT_a3d2af9040acfa08295efb50f0219149d}{alpha}
-\begin{DoxyCompactList}\small\item\em Scaling factor for the thermodynamic temperature. \end{DoxyCompactList}\item 
-\hypertarget{structpf__paramT_a43ec875779c5e7c8bf5fa7e837ec6d09}{\hyperlink{structmodel__detailsT}{model\-\_\-details\-T} \hyperlink{structpf__paramT_a43ec875779c5e7c8bf5fa7e837ec6d09}{model\-\_\-details}}\label{structpf__paramT_a43ec875779c5e7c8bf5fa7e837ec6d09}
+\begin{DoxyCompactList}\small\item\em Scaling factor for the thermodynamic temperature. \item\end{DoxyCompactList}\item 
+\hypertarget{structpf__paramT_a43ec875779c5e7c8bf5fa7e837ec6d09}{
+\hyperlink{structmodel__detailsT}{model\_\-detailsT} \hyperlink{structpf__paramT_a43ec875779c5e7c8bf5fa7e837ec6d09}{model\_\-details}}
+\label{structpf__paramT_a43ec875779c5e7c8bf5fa7e837ec6d09}
 
-\begin{DoxyCompactList}\small\item\em Model details to be used in the recursions. \end{DoxyCompactList}\end{DoxyCompactItemize}
+\begin{DoxyCompactList}\small\item\em Model details to be used in the recursions. \item\end{DoxyCompactList}\end{DoxyCompactItemize}
 
 
 \subsection{Detailed Description}
 The datastructure that contains temperature scaled Boltzmann weights of the energy parameters. 
 
 \subsection{Field Documentation}
-\hypertarget{structpf__paramT_a3d2af9040acfa08295efb50f0219149d}{\index{pf\-\_\-param\-T@{pf\-\_\-param\-T}!alpha@{alpha}}
-\index{alpha@{alpha}!pf_paramT@{pf\-\_\-param\-T}}
-\subsubsection[{alpha}]{\setlength{\rightskip}{0pt plus 5cm}double pf\-\_\-param\-T\-::alpha}}\label{structpf__paramT_a3d2af9040acfa08295efb50f0219149d}
-
+\hypertarget{structpf__paramT_a3d2af9040acfa08295efb50f0219149d}{
+\index{pf\_\-paramT@{pf\_\-paramT}!alpha@{alpha}}
+\index{alpha@{alpha}!pf_paramT@{pf\_\-paramT}}
+\subsubsection[{alpha}]{\setlength{\rightskip}{0pt plus 5cm}double {\bf pf\_\-paramT::alpha}}}
+\label{structpf__paramT_a3d2af9040acfa08295efb50f0219149d}
 
-Scaling factor for the thermodynamic temperature. 
 
-This allows for temperature scaling in Boltzmann factors independently from the energy contributions. The resulting Boltzmann factors are then computed by $ e^{-E/(\alpha \cdot K \cdot T)} $ 
+Scaling factor for the thermodynamic temperature. This allows for temperature scaling in Boltzmann factors independently from the energy contributions. The resulting Boltzmann factors are then computed by $ e^{-E/(\alpha \cdot K \cdot T)} $ 
 
-The documentation for this struct was generated from the following file\-:\begin{DoxyCompactItemize}
+The documentation for this struct was generated from the following file:\begin{DoxyCompactItemize}
 \item 
-/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/\hyperlink{data__structures_8h}{data\-\_\-structures.\-h}\end{DoxyCompactItemize}
+/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/\hyperlink{data__structures_8h}{data\_\-structures.h}\end{DoxyCompactItemize}