JWS-117 Compiled all tools with ./compilebin.sh and some were missing related files.

[jabaws.git] / binaries / src / ViennaRNA / doc / latex / structpu__out.tex

diff --git a/binaries/src/ViennaRNA/doc/latex/structpu__out.tex b/binaries/src/ViennaRNA/doc/latex/structpu__out.tex
index 7f59b83..bd4b619 100644 (file)
--- a/binaries/src/ViennaRNA/doc/latex/structpu__out.tex
+++ b/binaries/src/ViennaRNA/doc/latex/structpu__out.tex
@@ -1,34 +1,43 @@
-\hypertarget{structpu__out}{\section{pu\-\_\-out Struct Reference}
-\label{structpu__out}\index{pu\-\_\-out@{pu\-\_\-out}}
+\hypertarget{structpu__out}{
+\section{pu\_\-out Struct Reference}
+\label{structpu__out}\index{pu\_\-out@{pu\_\-out}}
 }
 
 
-Collection of all free\-\_\-energy of beeing unpaired values for output.  
-
-
+Collection of all free\_\-energy of beeing unpaired values for output.  
 \subsection*{Data Fields}
 \begin{DoxyCompactItemize}
 \item 
-\hypertarget{structpu__out_a314b8f43c3ee0bf6060afbeced5dbe6c}{int \hyperlink{structpu__out_a314b8f43c3ee0bf6060afbeced5dbe6c}{len}}\label{structpu__out_a314b8f43c3ee0bf6060afbeced5dbe6c}
+\hypertarget{structpu__out_a314b8f43c3ee0bf6060afbeced5dbe6c}{
+int \hyperlink{structpu__out_a314b8f43c3ee0bf6060afbeced5dbe6c}{len}}
+\label{structpu__out_a314b8f43c3ee0bf6060afbeced5dbe6c}
 
-\begin{DoxyCompactList}\small\item\em sequence length \end{DoxyCompactList}\item 
-\hypertarget{structpu__out_a7697bc7a46cd1b8e37e337e708cb6023}{int \hyperlink{structpu__out_a7697bc7a46cd1b8e37e337e708cb6023}{u\-\_\-vals}}\label{structpu__out_a7697bc7a46cd1b8e37e337e708cb6023}
+\begin{DoxyCompactList}\small\item\em sequence length \item\end{DoxyCompactList}\item 
+\hypertarget{structpu__out_a7697bc7a46cd1b8e37e337e708cb6023}{
+int \hyperlink{structpu__out_a7697bc7a46cd1b8e37e337e708cb6023}{u\_\-vals}}
+\label{structpu__out_a7697bc7a46cd1b8e37e337e708cb6023}
 
-\begin{DoxyCompactList}\small\item\em number of different -\/u values \end{DoxyCompactList}\item 
-\hypertarget{structpu__out_a638b0de1837cfd441871d005d3ab2938}{int \hyperlink{structpu__out_a638b0de1837cfd441871d005d3ab2938}{contribs}}\label{structpu__out_a638b0de1837cfd441871d005d3ab2938}
+\begin{DoxyCompactList}\small\item\em number of different -\/u values \item\end{DoxyCompactList}\item 
+\hypertarget{structpu__out_a638b0de1837cfd441871d005d3ab2938}{
+int \hyperlink{structpu__out_a638b0de1837cfd441871d005d3ab2938}{contribs}}
+\label{structpu__out_a638b0de1837cfd441871d005d3ab2938}
 
-\begin{DoxyCompactList}\small\item\em \mbox{[}-\/c \char`\"{}\-S\-H\-I\-M\-E\char`\"{}\mbox{]} \end{DoxyCompactList}\item 
-\hypertarget{structpu__out_ac9e9e30b16e7d04c770460b8487fb09d}{char $\ast$$\ast$ \hyperlink{structpu__out_ac9e9e30b16e7d04c770460b8487fb09d}{header}}\label{structpu__out_ac9e9e30b16e7d04c770460b8487fb09d}
+\begin{DoxyCompactList}\small\item\em \mbox{[}-\/c \char`\"{}SHIME\char`\"{}\mbox{]} \item\end{DoxyCompactList}\item 
+\hypertarget{structpu__out_ac9e9e30b16e7d04c770460b8487fb09d}{
+char $\ast$$\ast$ \hyperlink{structpu__out_ac9e9e30b16e7d04c770460b8487fb09d}{header}}
+\label{structpu__out_ac9e9e30b16e7d04c770460b8487fb09d}
 
-\begin{DoxyCompactList}\small\item\em header line \end{DoxyCompactList}\item 
-\hypertarget{structpu__out_a366edbc4170d5c177908e178ff340828}{double $\ast$$\ast$ \hyperlink{structpu__out_a366edbc4170d5c177908e178ff340828}{u\-\_\-values}}\label{structpu__out_a366edbc4170d5c177908e178ff340828}
+\begin{DoxyCompactList}\small\item\em header line \item\end{DoxyCompactList}\item 
+\hypertarget{structpu__out_a366edbc4170d5c177908e178ff340828}{
+double $\ast$$\ast$ \hyperlink{structpu__out_a366edbc4170d5c177908e178ff340828}{u\_\-values}}
+\label{structpu__out_a366edbc4170d5c177908e178ff340828}
 
-\begin{DoxyCompactList}\small\item\em (the -\/u values $\ast$ \mbox{[}-\/c \char`\"{}\-S\-H\-I\-M\-E\char`\"{}\mbox{]}) $\ast$ seq len \end{DoxyCompactList}\end{DoxyCompactItemize}
+\begin{DoxyCompactList}\small\item\em (the -\/u values $\ast$ \mbox{[}-\/c \char`\"{}SHIME\char`\"{}\mbox{]}) $\ast$ seq len \item\end{DoxyCompactList}\end{DoxyCompactItemize}
 
 
 \subsection{Detailed Description}
-Collection of all free\-\_\-energy of beeing unpaired values for output. 
+Collection of all free\_\-energy of beeing unpaired values for output. 
 
-The documentation for this struct was generated from the following file\-:\begin{DoxyCompactItemize}
+The documentation for this struct was generated from the following file:\begin{DoxyCompactItemize}
 \item 
-/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/\hyperlink{data__structures_8h}{data\-\_\-structures.\-h}\end{DoxyCompactItemize}
+/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/\hyperlink{data__structures_8h}{data\_\-structures.h}\end{DoxyCompactItemize}