JWS-117 Compiled all tools with ./compilebin.sh and some were missing related files.

[jabaws.git] / binaries / src / ViennaRNA / doc / latex / subopt_8h.tex

diff --git a/binaries/src/ViennaRNA/doc/latex/subopt_8h.tex b/binaries/src/ViennaRNA/doc/latex/subopt_8h.tex
index 1f54199..8b45dab 100644 (file)
--- a/binaries/src/ViennaRNA/doc/latex/subopt_8h.tex
+++ b/binaries/src/ViennaRNA/doc/latex/subopt_8h.tex
@@ -1,41 +1,45 @@
-\hypertarget{subopt_8h}{\section{/home/asherstnev/\-Projects/\-Java.projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/subopt.h File Reference}
-\label{subopt_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/subopt.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/subopt.\-h}}
+\hypertarget{subopt_8h}{
+\section{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/subopt.h File Reference}
+\label{subopt_8h}\index{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/subopt.h@{/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/subopt.h}}
 }
 
 
-R\-N\-Asubopt and density of states declarations.  
-
-
-Include dependency graph for subopt.\-h\-:
-\nopagebreak
+RNAsubopt and density of states declarations.  
+Include dependency graph for subopt.h:\nopagebreak
 \begin{figure}[H]
 \begin{center}
 \leavevmode
-\includegraphics[width=250pt]{subopt_8h__incl}
+\includegraphics[width=209pt]{subopt_8h__incl}
 \end{center}
 \end{figure}
 \subsection*{Functions}
 \begin{DoxyCompactItemize}
 \item 
-\hyperlink{structSOLUTION}{S\-O\-L\-U\-T\-I\-O\-N} $\ast$ \hyperlink{group__subopt__wuchty_ga700f662506a233e42dd7fda74fafd40e}{subopt} (char $\ast$seq, char $\ast$structure, int delta, F\-I\-L\-E $\ast$fp)
-\begin{DoxyCompactList}\small\item\em Returns list of subopt structures or writes to fp. \end{DoxyCompactList}\item 
-\hypertarget{group__subopt__wuchty_ga554dedfcdb249fdf151caade58666e4d}{\hyperlink{structSOLUTION}{S\-O\-L\-U\-T\-I\-O\-N} $\ast$ \hyperlink{group__subopt__wuchty_ga554dedfcdb249fdf151caade58666e4d}{subopt\-\_\-par} (char $\ast$seq, char $\ast$structure, \hyperlink{structparamT}{param\-T} $\ast$parameters, int delta, int is\-\_\-constrained, int is\-\_\-circular, F\-I\-L\-E $\ast$fp)}\label{group__subopt__wuchty_ga554dedfcdb249fdf151caade58666e4d}
-
-\begin{DoxyCompactList}\small\item\em Returns list of subopt structures or writes to fp. \end{DoxyCompactList}\item 
-\hyperlink{structSOLUTION}{S\-O\-L\-U\-T\-I\-O\-N} $\ast$ \hyperlink{group__subopt__wuchty_ga8634516e4740e0b6c9a46d2bae940340}{subopt\-\_\-circ} (char $\ast$seq, char $\ast$sequence, int delta, F\-I\-L\-E $\ast$fp)
-\begin{DoxyCompactList}\small\item\em Returns list of circular subopt structures or writes to fp. \end{DoxyCompactList}\end{DoxyCompactItemize}
+\hyperlink{structSOLUTION}{SOLUTION} $\ast$ \hyperlink{group__subopt__wuchty_ga700f662506a233e42dd7fda74fafd40e}{subopt} (char $\ast$seq, char $\ast$structure, int delta, FILE $\ast$fp)
+\begin{DoxyCompactList}\small\item\em Returns list of subopt structures or writes to fp. \item\end{DoxyCompactList}\item 
+\hypertarget{group__subopt__wuchty_ga554dedfcdb249fdf151caade58666e4d}{
+\hyperlink{structSOLUTION}{SOLUTION} $\ast$ \hyperlink{group__subopt__wuchty_ga554dedfcdb249fdf151caade58666e4d}{subopt\_\-par} (char $\ast$seq, char $\ast$structure, \hyperlink{structparamT}{paramT} $\ast$parameters, int delta, int is\_\-constrained, int is\_\-circular, FILE $\ast$fp)}
+\label{group__subopt__wuchty_ga554dedfcdb249fdf151caade58666e4d}
+
+\begin{DoxyCompactList}\small\item\em Returns list of subopt structures or writes to fp. \item\end{DoxyCompactList}\item 
+\hyperlink{structSOLUTION}{SOLUTION} $\ast$ \hyperlink{group__subopt__wuchty_ga8634516e4740e0b6c9a46d2bae940340}{subopt\_\-circ} (char $\ast$seq, char $\ast$sequence, int delta, FILE $\ast$fp)
+\begin{DoxyCompactList}\small\item\em Returns list of circular subopt structures or writes to fp. \item\end{DoxyCompactList}\end{DoxyCompactItemize}
 \subsection*{Variables}
 \begin{DoxyCompactItemize}
 \item 
-\hypertarget{group__subopt__wuchty_ga873cf8ed69e0437f8efa8b1fec854a0e}{int \hyperlink{group__subopt__wuchty_ga873cf8ed69e0437f8efa8b1fec854a0e}{subopt\-\_\-sorted}}\label{group__subopt__wuchty_ga873cf8ed69e0437f8efa8b1fec854a0e}
+\hypertarget{group__subopt__wuchty_ga873cf8ed69e0437f8efa8b1fec854a0e}{
+int \hyperlink{group__subopt__wuchty_ga873cf8ed69e0437f8efa8b1fec854a0e}{subopt\_\-sorted}}
+\label{group__subopt__wuchty_ga873cf8ed69e0437f8efa8b1fec854a0e}
 
-\begin{DoxyCompactList}\small\item\em Sort output by energy. \end{DoxyCompactList}\item 
-\hypertarget{group__subopt__wuchty_ga5e57d914bcb5feeecdf520e25313fcfe}{double \hyperlink{group__subopt__wuchty_ga5e57d914bcb5feeecdf520e25313fcfe}{print\-\_\-energy}}\label{group__subopt__wuchty_ga5e57d914bcb5feeecdf520e25313fcfe}
+\begin{DoxyCompactList}\small\item\em Sort output by energy. \item\end{DoxyCompactList}\item 
+\hypertarget{group__subopt__wuchty_ga5e57d914bcb5feeecdf520e25313fcfe}{
+double \hyperlink{group__subopt__wuchty_ga5e57d914bcb5feeecdf520e25313fcfe}{print\_\-energy}}
+\label{group__subopt__wuchty_ga5e57d914bcb5feeecdf520e25313fcfe}
 
-\begin{DoxyCompactList}\small\item\em printing threshold for use with log\-M\-L \end{DoxyCompactList}\item 
-int \hyperlink{group__dos_ga937634a76b46a22530a74906f1957a9e}{density\-\_\-of\-\_\-states} \mbox{[}\hyperlink{data__structures_8h_a5ec740b80afb4906ba4311dbd8ddbd89}{M\-A\-X\-D\-O\-S}+1\mbox{]}
-\begin{DoxyCompactList}\small\item\em The Density of States. \end{DoxyCompactList}\end{DoxyCompactItemize}
+\begin{DoxyCompactList}\small\item\em printing threshold for use with logML \item\end{DoxyCompactList}\item 
+int \hyperlink{group__dos_ga937634a76b46a22530a74906f1957a9e}{density\_\-of\_\-states} \mbox{[}MAXDOS+1\mbox{]}
+\begin{DoxyCompactList}\small\item\em The Density of States. \item\end{DoxyCompactList}\end{DoxyCompactItemize}
 
 
 \subsection{Detailed Description}
-R\-N\-Asubopt and density of states declarations. 
\ No newline at end of file
+RNAsubopt and density of states declarations. 
\ No newline at end of file