--- /dev/null
+# This Makefile is for the RNA extension to perl.
+#
+# It was generated automatically by MakeMaker version
+# 6.55_02 (Revision: 65502) from the contents of
+# Makefile.PL. Don't edit this file, edit Makefile.PL instead.
+#
+# ANY CHANGES MADE HERE WILL BE LOST!
+#
+# MakeMaker ARGV: (q[PREFIX=/usr/local], q[LDDLFLAGS= -shared])
+#
+
+# MakeMaker Parameters:
+
+# AUTHOR => q[Ivo Hofacker <ivo@tbi.univie.ac.at>]
+# BUILD_REQUIRES => { }
+# CCFLAGS => q[-D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 $(AM_CXXFLAGS) $(CXXFLAGS) -I../../H]
+# LD => q[${CXX}]
+# LIBS => [q[-lm]]
+# MAKEFILE => q[Makefile.perl]
+# MYEXTLIB => q[../../lib/libRNA.a]
+# NAME => q[RNA]
+# OBJECT => q[RNA_wrap.o]
+# OPTIMIZE => q[-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 ]
+# PM => { RNA.pm=>q[$(INST_LIBDIR)/RNA.pm] }
+# PREREQ_PM => { }
+# VERSION => q[2.1.2]
+# dynamic_lib => { OTHERLDFLAGS=>q[$(AM_CXXFLAGS) $(CXXFLAGS) $(AM_LDFLAGS) $(LDFLAGS) -fopenmp] }
+
+# --- MakeMaker post_initialize section:
+
+
+# --- MakeMaker const_config section:
+
+# These definitions are from config.sh (via /usr/lib64/perl5/Config.pm).
+# They may have been overridden via Makefile.PL or on the command line.
+AR = ar
+CC = gcc
+CCCDLFLAGS = -fPIC
+CCDLFLAGS = -Wl,-E -Wl,-rpath,/usr/lib64/perl5/CORE
+DLEXT = so
+DLSRC = dl_dlopen.xs
+EXE_EXT =
+FULL_AR = /usr/bin/ar
+LD = ${CXX}
+LDDLFLAGS = -shared
+LDFLAGS = -fstack-protector
+LIBC =
+LIB_EXT = .a
+OBJ_EXT = .o
+OSNAME = linux
+OSVERS = 2.6.32-220.el6.x86_64
+RANLIB = :
+SITELIBEXP = /usr/local/share/perl5
+SITEARCHEXP = /usr/local/lib64/perl5
+SO = so
+VENDORARCHEXP = /usr/lib64/perl5/vendor_perl
+VENDORLIBEXP = /usr/share/perl5/vendor_perl
+
+
+# --- MakeMaker constants section:
+AR_STATIC_ARGS = cr
+DIRFILESEP = /
+DFSEP = $(DIRFILESEP)
+NAME = RNA
+NAME_SYM = RNA
+VERSION = 2.1.2
+VERSION_MACRO = VERSION
+VERSION_SYM = 2_1_2
+DEFINE_VERSION = -D$(VERSION_MACRO)=\"$(VERSION)\"
+XS_VERSION = 2.1.2
+XS_VERSION_MACRO = XS_VERSION
+XS_DEFINE_VERSION = -D$(XS_VERSION_MACRO)=\"$(XS_VERSION)\"
+INST_ARCHLIB = blib/arch
+INST_SCRIPT = blib/script
+INST_BIN = blib/bin
+INST_LIB = blib/lib
+INST_MAN1DIR = blib/man1
+INST_MAN3DIR = blib/man3
+MAN1EXT = 1
+MAN3EXT = 3pm
+INSTALLDIRS = site
+DESTDIR =
+PREFIX = /usr/local
+PERLPREFIX = $(PREFIX)
+SITEPREFIX = $(PREFIX)
+VENDORPREFIX = $(PREFIX)
+INSTALLPRIVLIB = $(PERLPREFIX)/share/perl5
+DESTINSTALLPRIVLIB = $(DESTDIR)$(INSTALLPRIVLIB)
+INSTALLSITELIB = $(SITEPREFIX)/share/perl5
+DESTINSTALLSITELIB = $(DESTDIR)$(INSTALLSITELIB)
+INSTALLVENDORLIB = $(VENDORPREFIX)/share/perl5/vendor_perl
+DESTINSTALLVENDORLIB = $(DESTDIR)$(INSTALLVENDORLIB)
+INSTALLARCHLIB = $(PERLPREFIX)/lib64/perl5
+DESTINSTALLARCHLIB = $(DESTDIR)$(INSTALLARCHLIB)
+INSTALLSITEARCH = $(SITEPREFIX)/lib64/perl5
+DESTINSTALLSITEARCH = $(DESTDIR)$(INSTALLSITEARCH)
+INSTALLVENDORARCH = $(VENDORPREFIX)/lib64/perl5/vendor_perl
+DESTINSTALLVENDORARCH = $(DESTDIR)$(INSTALLVENDORARCH)
+INSTALLBIN = $(PERLPREFIX)/bin
+DESTINSTALLBIN = $(DESTDIR)$(INSTALLBIN)
+INSTALLSITEBIN = $(SITEPREFIX)/bin
+DESTINSTALLSITEBIN = $(DESTDIR)$(INSTALLSITEBIN)
+INSTALLVENDORBIN = $(VENDORPREFIX)/bin
+DESTINSTALLVENDORBIN = $(DESTDIR)$(INSTALLVENDORBIN)
+INSTALLSCRIPT = $(PERLPREFIX)/bin
+DESTINSTALLSCRIPT = $(DESTDIR)$(INSTALLSCRIPT)
+INSTALLSITESCRIPT = $(SITEPREFIX)/bin
+DESTINSTALLSITESCRIPT = $(DESTDIR)$(INSTALLSITESCRIPT)
+INSTALLVENDORSCRIPT = $(VENDORPREFIX)/bin
+DESTINSTALLVENDORSCRIPT = $(DESTDIR)$(INSTALLVENDORSCRIPT)
+INSTALLMAN1DIR = $(PERLPREFIX)/share/man/man1
+DESTINSTALLMAN1DIR = $(DESTDIR)$(INSTALLMAN1DIR)
+INSTALLSITEMAN1DIR = $(SITEPREFIX)/share/man/man1
+DESTINSTALLSITEMAN1DIR = $(DESTDIR)$(INSTALLSITEMAN1DIR)
+INSTALLVENDORMAN1DIR = $(VENDORPREFIX)/share/man/man1
+DESTINSTALLVENDORMAN1DIR = $(DESTDIR)$(INSTALLVENDORMAN1DIR)
+INSTALLMAN3DIR = $(PERLPREFIX)/share/man/man3
+DESTINSTALLMAN3DIR = $(DESTDIR)$(INSTALLMAN3DIR)
+INSTALLSITEMAN3DIR = $(SITEPREFIX)/share/man/man3
+DESTINSTALLSITEMAN3DIR = $(DESTDIR)$(INSTALLSITEMAN3DIR)
+INSTALLVENDORMAN3DIR = $(VENDORPREFIX)/share/man/man3
+DESTINSTALLVENDORMAN3DIR = $(DESTDIR)$(INSTALLVENDORMAN3DIR)
+PERL_LIB = /usr/share/perl5
+PERL_ARCHLIB = /usr/lib64/perl5
+LIBPERL_A = libperl.a
+MYEXTLIB = ../../lib/libRNA.a
+FIRST_MAKEFILE = Makefile.perl
+MAKEFILE_OLD = Makefile.perl.old
+MAKE_APERL_FILE = Makefile.perl.aperl
+PERLMAINCC = $(CC)
+PERL_INC = /usr/lib64/perl5/CORE
+PERL = /usr/bin/perl
+FULLPERL = /usr/bin/perl
+ABSPERL = $(PERL)
+PERLRUN = $(PERL)
+FULLPERLRUN = $(FULLPERL)
+ABSPERLRUN = $(ABSPERL)
+PERLRUNINST = $(PERLRUN) "-I$(INST_ARCHLIB)" "-I$(INST_LIB)"
+FULLPERLRUNINST = $(FULLPERLRUN) "-I$(INST_ARCHLIB)" "-I$(INST_LIB)"
+ABSPERLRUNINST = $(ABSPERLRUN) "-I$(INST_ARCHLIB)" "-I$(INST_LIB)"
+PERL_CORE = 0
+PERM_DIR = 755
+PERM_RW = 644
+PERM_RWX = 755
+
+MAKEMAKER = /usr/share/perl5/ExtUtils/MakeMaker.pm
+MM_VERSION = 6.55_02
+MM_REVISION = 65502
+
+# FULLEXT = Pathname for extension directory (eg Foo/Bar/Oracle).
+# BASEEXT = Basename part of FULLEXT. May be just equal FULLEXT. (eg Oracle)
+# PARENT_NAME = NAME without BASEEXT and no trailing :: (eg Foo::Bar)
+# DLBASE = Basename part of dynamic library. May be just equal BASEEXT.
+MAKE = make
+FULLEXT = RNA
+BASEEXT = RNA
+PARENT_NAME =
+DLBASE = $(BASEEXT)
+VERSION_FROM =
+OBJECT = RNA_wrap$(OBJ_EXT)
+LDFROM = $(OBJECT)
+LINKTYPE = dynamic
+BOOTDEP =
+
+# Handy lists of source code files:
+XS_FILES =
+C_FILES = RNA_wrap.c
+O_FILES = RNA_wrap.o
+H_FILES =
+MAN1PODS =
+MAN3PODS = RNA.pm
+
+# Where is the Config information that we are using/depend on
+CONFIGDEP = $(PERL_ARCHLIB)$(DFSEP)Config.pm $(PERL_INC)$(DFSEP)config.h
+
+# Where to build things
+INST_LIBDIR = $(INST_LIB)
+INST_ARCHLIBDIR = $(INST_ARCHLIB)
+
+INST_AUTODIR = $(INST_LIB)/auto/$(FULLEXT)
+INST_ARCHAUTODIR = $(INST_ARCHLIB)/auto/$(FULLEXT)
+
+INST_STATIC = $(INST_ARCHAUTODIR)/$(BASEEXT)$(LIB_EXT)
+INST_DYNAMIC = $(INST_ARCHAUTODIR)/$(DLBASE).$(DLEXT)
+INST_BOOT = $(INST_ARCHAUTODIR)/$(BASEEXT).bs
+
+# Extra linker info
+EXPORT_LIST =
+PERL_ARCHIVE =
+PERL_ARCHIVE_AFTER =
+
+
+TO_INST_PM = RNA.pm
+
+PM_TO_BLIB = RNA.pm \
+ $(INST_LIBDIR)/RNA.pm
+
+
+# --- MakeMaker platform_constants section:
+MM_Unix_VERSION = 6.55_02
+PERL_MALLOC_DEF = -DPERL_EXTMALLOC_DEF -Dmalloc=Perl_malloc -Dfree=Perl_mfree -Drealloc=Perl_realloc -Dcalloc=Perl_calloc
+
+
+# --- MakeMaker tool_autosplit section:
+# Usage: $(AUTOSPLITFILE) FileToSplit AutoDirToSplitInto
+AUTOSPLITFILE = $(ABSPERLRUN) -e 'use AutoSplit; autosplit($$ARGV[0], $$ARGV[1], 0, 1, 1)' --
+
+
+
+# --- MakeMaker tool_xsubpp section:
+
+XSUBPPDIR = /usr/share/perl5/ExtUtils
+XSUBPP = $(XSUBPPDIR)$(DFSEP)xsubpp
+XSUBPPRUN = $(PERLRUN) $(XSUBPP)
+XSPROTOARG =
+XSUBPPDEPS = /usr/share/perl5/ExtUtils/typemap $(XSUBPP)
+XSUBPPARGS = -typemap /usr/share/perl5/ExtUtils/typemap
+XSUBPP_EXTRA_ARGS =
+
+
+# --- MakeMaker tools_other section:
+SHELL = /bin/sh
+CHMOD = chmod
+CP = cp
+MV = mv
+NOOP = $(TRUE)
+NOECHO = @
+RM_F = rm -f
+RM_RF = rm -rf
+TEST_F = test -f
+TOUCH = touch
+UMASK_NULL = umask 0
+DEV_NULL = > /dev/null 2>&1
+MKPATH = $(ABSPERLRUN) -MExtUtils::Command -e 'mkpath' --
+EQUALIZE_TIMESTAMP = $(ABSPERLRUN) -MExtUtils::Command -e 'eqtime' --
+FALSE = false
+TRUE = true
+ECHO = echo
+ECHO_N = echo -n
+UNINST = 0
+VERBINST = 0
+MOD_INSTALL = $(ABSPERLRUN) -MExtUtils::Install -e 'install([ from_to => {@ARGV}, verbose => '\''$(VERBINST)'\'', uninstall_shadows => '\''$(UNINST)'\'', dir_mode => '\''$(PERM_DIR)'\'' ]);' --
+DOC_INSTALL = $(ABSPERLRUN) -MExtUtils::Command::MM -e 'perllocal_install' --
+UNINSTALL = $(ABSPERLRUN) -MExtUtils::Command::MM -e 'uninstall' --
+WARN_IF_OLD_PACKLIST = $(ABSPERLRUN) -MExtUtils::Command::MM -e 'warn_if_old_packlist' --
+MACROSTART =
+MACROEND =
+USEMAKEFILE = -f
+FIXIN = $(ABSPERLRUN) -MExtUtils::MY -e 'MY->fixin(shift)' --
+
+
+# --- MakeMaker makemakerdflt section:
+makemakerdflt : all
+ $(NOECHO) $(NOOP)
+
+
+# --- MakeMaker dist section:
+TAR = tar
+TARFLAGS = cvf
+ZIP = zip
+ZIPFLAGS = -r
+COMPRESS = gzip --best
+SUFFIX = .gz
+SHAR = shar
+PREOP = $(NOECHO) $(NOOP)
+POSTOP = $(NOECHO) $(NOOP)
+TO_UNIX = $(NOECHO) $(NOOP)
+CI = ci -u
+RCS_LABEL = rcs -Nv$(VERSION_SYM): -q
+DIST_CP = best
+DIST_DEFAULT = tardist
+DISTNAME = RNA
+DISTVNAME = RNA-2.1.2
+
+
+# --- MakeMaker macro section:
+
+
+# --- MakeMaker depend section:
+
+
+# --- MakeMaker cflags section:
+
+CCFLAGS = -D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 $(AM_CXXFLAGS) $(CXXFLAGS) -I../../H
+OPTIMIZE = -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64
+PERLTYPE =
+MPOLLUTE =
+
+
+# --- MakeMaker const_loadlibs section:
+
+# RNA might depend on some other libraries:
+# See ExtUtils::Liblist for details
+#
+EXTRALIBS =
+LDLOADLIBS = -lm
+BSLOADLIBS =
+
+
+# --- MakeMaker const_cccmd section:
+CCCMD = $(CC) -c $(PASTHRU_INC) $(INC) \
+ $(CCFLAGS) $(OPTIMIZE) \
+ $(PERLTYPE) $(MPOLLUTE) $(DEFINE_VERSION) \
+ $(XS_DEFINE_VERSION)
+
+# --- MakeMaker post_constants section:
+
+
+# --- MakeMaker pasthru section:
+
+PASTHRU = LIBPERL_A="$(LIBPERL_A)"\
+ LINKTYPE="$(LINKTYPE)"\
+ OPTIMIZE="$(OPTIMIZE)"\
+ PREFIX="$(PREFIX)"
+
+
+# --- MakeMaker special_targets section:
+.SUFFIXES : .xs .c .C .cpp .i .s .cxx .cc $(OBJ_EXT)
+
+.PHONY: all config static dynamic test linkext manifest blibdirs clean realclean disttest distdir
+
+
+
+# --- MakeMaker c_o section:
+
+.c.i:
+ gcc -E -c $(PASTHRU_INC) $(INC) \
+ $(CCFLAGS) $(OPTIMIZE) \
+ $(PERLTYPE) $(MPOLLUTE) $(DEFINE_VERSION) \
+ $(XS_DEFINE_VERSION) $(CCCDLFLAGS) "-I$(PERL_INC)" $(PASTHRU_DEFINE) $(DEFINE) $*.c > $*.i
+
+.c.s:
+ $(CCCMD) -S $(CCCDLFLAGS) "-I$(PERL_INC)" $(PASTHRU_DEFINE) $(DEFINE) $*.c
+
+.c$(OBJ_EXT):
+ $(CCCMD) $(CCCDLFLAGS) "-I$(PERL_INC)" $(PASTHRU_DEFINE) $(DEFINE) $*.c
+
+.cpp$(OBJ_EXT):
+ $(CCCMD) $(CCCDLFLAGS) "-I$(PERL_INC)" $(PASTHRU_DEFINE) $(DEFINE) $*.cpp
+
+.cxx$(OBJ_EXT):
+ $(CCCMD) $(CCCDLFLAGS) "-I$(PERL_INC)" $(PASTHRU_DEFINE) $(DEFINE) $*.cxx
+
+.cc$(OBJ_EXT):
+ $(CCCMD) $(CCCDLFLAGS) "-I$(PERL_INC)" $(PASTHRU_DEFINE) $(DEFINE) $*.cc
+
+.C$(OBJ_EXT):
+ $(CCCMD) $(CCCDLFLAGS) "-I$(PERL_INC)" $(PASTHRU_DEFINE) $(DEFINE) $*.C
+
+
+# --- MakeMaker xs_c section:
+
+.xs.c:
+ $(XSUBPPRUN) $(XSPROTOARG) $(XSUBPPARGS) $(XSUBPP_EXTRA_ARGS) $*.xs > $*.xsc && $(MV) $*.xsc $*.c
+
+
+# --- MakeMaker xs_o section:
+
+.xs$(OBJ_EXT):
+ $(XSUBPPRUN) $(XSPROTOARG) $(XSUBPPARGS) $*.xs > $*.xsc && $(MV) $*.xsc $*.c
+ $(CCCMD) $(CCCDLFLAGS) "-I$(PERL_INC)" $(PASTHRU_DEFINE) $(DEFINE) $*.c
+
+
+# --- MakeMaker top_targets section:
+all :: pure_all manifypods
+ $(NOECHO) $(NOOP)
+
+
+pure_all :: config pm_to_blib subdirs linkext
+ $(NOECHO) $(NOOP)
+
+subdirs :: $(MYEXTLIB)
+ $(NOECHO) $(NOOP)
+
+config :: $(FIRST_MAKEFILE) blibdirs
+ $(NOECHO) $(NOOP)
+
+help :
+ perldoc ExtUtils::MakeMaker
+
+
+# --- MakeMaker blibdirs section:
+blibdirs : $(INST_LIBDIR)$(DFSEP).exists $(INST_ARCHLIB)$(DFSEP).exists $(INST_AUTODIR)$(DFSEP).exists $(INST_ARCHAUTODIR)$(DFSEP).exists $(INST_BIN)$(DFSEP).exists $(INST_SCRIPT)$(DFSEP).exists $(INST_MAN1DIR)$(DFSEP).exists $(INST_MAN3DIR)$(DFSEP).exists
+ $(NOECHO) $(NOOP)
+
+# Backwards compat with 6.18 through 6.25
+blibdirs.ts : blibdirs
+ $(NOECHO) $(NOOP)
+
+$(INST_LIBDIR)$(DFSEP).exists :: Makefile.PL
+ $(NOECHO) $(MKPATH) $(INST_LIBDIR)
+ $(NOECHO) $(CHMOD) $(PERM_DIR) $(INST_LIBDIR)
+ $(NOECHO) $(TOUCH) $(INST_LIBDIR)$(DFSEP).exists
+
+$(INST_ARCHLIB)$(DFSEP).exists :: Makefile.PL
+ $(NOECHO) $(MKPATH) $(INST_ARCHLIB)
+ $(NOECHO) $(CHMOD) $(PERM_DIR) $(INST_ARCHLIB)
+ $(NOECHO) $(TOUCH) $(INST_ARCHLIB)$(DFSEP).exists
+
+$(INST_AUTODIR)$(DFSEP).exists :: Makefile.PL
+ $(NOECHO) $(MKPATH) $(INST_AUTODIR)
+ $(NOECHO) $(CHMOD) $(PERM_DIR) $(INST_AUTODIR)
+ $(NOECHO) $(TOUCH) $(INST_AUTODIR)$(DFSEP).exists
+
+$(INST_ARCHAUTODIR)$(DFSEP).exists :: Makefile.PL
+ $(NOECHO) $(MKPATH) $(INST_ARCHAUTODIR)
+ $(NOECHO) $(CHMOD) $(PERM_DIR) $(INST_ARCHAUTODIR)
+ $(NOECHO) $(TOUCH) $(INST_ARCHAUTODIR)$(DFSEP).exists
+
+$(INST_BIN)$(DFSEP).exists :: Makefile.PL
+ $(NOECHO) $(MKPATH) $(INST_BIN)
+ $(NOECHO) $(CHMOD) $(PERM_DIR) $(INST_BIN)
+ $(NOECHO) $(TOUCH) $(INST_BIN)$(DFSEP).exists
+
+$(INST_SCRIPT)$(DFSEP).exists :: Makefile.PL
+ $(NOECHO) $(MKPATH) $(INST_SCRIPT)
+ $(NOECHO) $(CHMOD) $(PERM_DIR) $(INST_SCRIPT)
+ $(NOECHO) $(TOUCH) $(INST_SCRIPT)$(DFSEP).exists
+
+$(INST_MAN1DIR)$(DFSEP).exists :: Makefile.PL
+ $(NOECHO) $(MKPATH) $(INST_MAN1DIR)
+ $(NOECHO) $(CHMOD) $(PERM_DIR) $(INST_MAN1DIR)
+ $(NOECHO) $(TOUCH) $(INST_MAN1DIR)$(DFSEP).exists
+
+$(INST_MAN3DIR)$(DFSEP).exists :: Makefile.PL
+ $(NOECHO) $(MKPATH) $(INST_MAN3DIR)
+ $(NOECHO) $(CHMOD) $(PERM_DIR) $(INST_MAN3DIR)
+ $(NOECHO) $(TOUCH) $(INST_MAN3DIR)$(DFSEP).exists
+
+
+
+# --- MakeMaker linkext section:
+
+linkext :: $(LINKTYPE)
+ $(NOECHO) $(NOOP)
+
+
+# --- MakeMaker dlsyms section:
+
+
+# --- MakeMaker dynamic section:
+
+dynamic :: $(FIRST_MAKEFILE) $(INST_DYNAMIC) $(INST_BOOT)
+ $(NOECHO) $(NOOP)
+
+
+# --- MakeMaker dynamic_bs section:
+BOOTSTRAP = $(BASEEXT).bs
+
+# As Mkbootstrap might not write a file (if none is required)
+# we use touch to prevent make continually trying to remake it.
+# The DynaLoader only reads a non-empty file.
+$(BOOTSTRAP) : $(FIRST_MAKEFILE) $(BOOTDEP) $(INST_ARCHAUTODIR)$(DFSEP).exists
+ $(NOECHO) $(ECHO) "Running Mkbootstrap for $(NAME) ($(BSLOADLIBS))"
+ $(NOECHO) $(PERLRUN) \
+ "-MExtUtils::Mkbootstrap" \
+ -e "Mkbootstrap('$(BASEEXT)','$(BSLOADLIBS)');"
+ $(NOECHO) $(TOUCH) $@
+ $(CHMOD) $(PERM_RW) $@
+
+$(INST_BOOT) : $(BOOTSTRAP) $(INST_ARCHAUTODIR)$(DFSEP).exists
+ $(NOECHO) $(RM_RF) $@
+ - $(CP) $(BOOTSTRAP) $@
+ $(CHMOD) $(PERM_RW) $@
+
+
+# --- MakeMaker dynamic_lib section:
+
+# This section creates the dynamically loadable $(INST_DYNAMIC)
+# from $(OBJECT) and possibly $(MYEXTLIB).
+ARMAYBE = :
+OTHERLDFLAGS = $(AM_CXXFLAGS) $(CXXFLAGS) $(AM_LDFLAGS) $(LDFLAGS) -fopenmp
+INST_DYNAMIC_DEP =
+INST_DYNAMIC_FIX =
+
+$(INST_DYNAMIC): $(OBJECT) $(MYEXTLIB) $(BOOTSTRAP) $(INST_ARCHAUTODIR)$(DFSEP).exists $(EXPORT_LIST) $(PERL_ARCHIVE) $(PERL_ARCHIVE_AFTER) $(INST_DYNAMIC_DEP)
+ $(RM_F) $@
+ $(LD) $(LDDLFLAGS) $(LDFROM) $(OTHERLDFLAGS) -o $@ $(MYEXTLIB) \
+ $(PERL_ARCHIVE) $(LDLOADLIBS) $(PERL_ARCHIVE_AFTER) $(EXPORT_LIST) \
+ $(INST_DYNAMIC_FIX)
+ $(CHMOD) $(PERM_RWX) $@
+
+
+# --- MakeMaker static section:
+
+## $(INST_PM) has been moved to the all: target.
+## It remains here for awhile to allow for old usage: "make static"
+static :: $(FIRST_MAKEFILE) $(INST_STATIC)
+ $(NOECHO) $(NOOP)
+
+
+# --- MakeMaker static_lib section:
+
+$(INST_STATIC) : $(OBJECT) $(MYEXTLIB) $(INST_ARCHAUTODIR)$(DFSEP).exists
+ $(RM_RF) $@
+ $(CP) $(MYEXTLIB) $@
+ $(FULL_AR) $(AR_STATIC_ARGS) $@ $(OBJECT) && $(RANLIB) $@
+ $(CHMOD) $(PERM_RWX) $@
+ $(NOECHO) $(ECHO) "$(EXTRALIBS)" > $(INST_ARCHAUTODIR)/extralibs.ld
+
+
+# --- MakeMaker manifypods section:
+
+POD2MAN_EXE = $(PERLRUN) "-MExtUtils::Command::MM" -e pod2man "--"
+POD2MAN = $(POD2MAN_EXE)
+
+
+manifypods : pure_all \
+ RNA.pm
+ $(NOECHO) $(POD2MAN) --section=3 --perm_rw=$(PERM_RW) \
+ RNA.pm $(INST_MAN3DIR)/RNA.$(MAN3EXT)
+
+
+
+
+# --- MakeMaker processPL section:
+
+
+# --- MakeMaker installbin section:
+
+
+# --- MakeMaker subdirs section:
+
+# none
+
+# --- MakeMaker clean_subdirs section:
+clean_subdirs :
+ $(NOECHO) $(NOOP)
+
+
+# --- MakeMaker clean section:
+
+# Delete temporary files but do not touch installed files. We don't delete
+# the Makefile here so a later make realclean still has a makefile to use.
+
+clean :: clean_subdirs
+ - $(RM_F) \
+ *$(LIB_EXT) core \
+ core.[0-9] $(INST_ARCHAUTODIR)/extralibs.all \
+ core.[0-9][0-9] $(BASEEXT).bso \
+ pm_to_blib.ts core.[0-9][0-9][0-9][0-9] \
+ $(BASEEXT).x $(BOOTSTRAP) \
+ perl$(EXE_EXT) tmon.out \
+ *$(OBJ_EXT) pm_to_blib \
+ $(INST_ARCHAUTODIR)/extralibs.ld blibdirs.ts \
+ core.[0-9][0-9][0-9][0-9][0-9] *perl.core \
+ core.*perl.*.? $(MAKE_APERL_FILE) \
+ perl $(BASEEXT).def \
+ core.[0-9][0-9][0-9] mon.out \
+ lib$(BASEEXT).def perlmain.c \
+ perl.exe so_locations \
+ $(BASEEXT).exp
+ - $(RM_RF) \
+ blib
+ - $(MV) $(FIRST_MAKEFILE) $(MAKEFILE_OLD) $(DEV_NULL)
+
+
+# --- MakeMaker realclean_subdirs section:
+realclean_subdirs :
+ $(NOECHO) $(NOOP)
+
+
+# --- MakeMaker realclean section:
+# Delete temporary files (via clean) and also delete dist files
+realclean purge :: clean realclean_subdirs
+ - $(RM_F) \
+ $(OBJECT) $(MAKEFILE_OLD) \
+ $(FIRST_MAKEFILE)
+ - $(RM_RF) \
+ $(DISTVNAME)
+
+
+# --- MakeMaker metafile section:
+metafile : create_distdir
+ $(NOECHO) $(ECHO) Generating META.yml
+ $(NOECHO) $(ECHO) '--- #YAML:1.0' > META_new.yml
+ $(NOECHO) $(ECHO) 'name: RNA' >> META_new.yml
+ $(NOECHO) $(ECHO) 'version: 2.1.2' >> META_new.yml
+ $(NOECHO) $(ECHO) 'abstract: ~' >> META_new.yml
+ $(NOECHO) $(ECHO) 'author:' >> META_new.yml
+ $(NOECHO) $(ECHO) ' - Ivo Hofacker <ivo@tbi.univie.ac.at>' >> META_new.yml
+ $(NOECHO) $(ECHO) 'license: unknown' >> META_new.yml
+ $(NOECHO) $(ECHO) 'distribution_type: module' >> META_new.yml
+ $(NOECHO) $(ECHO) 'configure_requires:' >> META_new.yml
+ $(NOECHO) $(ECHO) ' ExtUtils::MakeMaker: 0' >> META_new.yml
+ $(NOECHO) $(ECHO) 'build_requires:' >> META_new.yml
+ $(NOECHO) $(ECHO) ' ExtUtils::MakeMaker: 0' >> META_new.yml
+ $(NOECHO) $(ECHO) 'requires: {}' >> META_new.yml
+ $(NOECHO) $(ECHO) 'no_index:' >> META_new.yml
+ $(NOECHO) $(ECHO) ' directory:' >> META_new.yml
+ $(NOECHO) $(ECHO) ' - t' >> META_new.yml
+ $(NOECHO) $(ECHO) ' - inc' >> META_new.yml
+ $(NOECHO) $(ECHO) 'generated_by: ExtUtils::MakeMaker version 6.55_02' >> META_new.yml
+ $(NOECHO) $(ECHO) 'meta-spec:' >> META_new.yml
+ $(NOECHO) $(ECHO) ' url: http://module-build.sourceforge.net/META-spec-v1.4.html' >> META_new.yml
+ $(NOECHO) $(ECHO) ' version: 1.4' >> META_new.yml
+ -$(NOECHO) $(MV) META_new.yml $(DISTVNAME)/META.yml
+
+
+# --- MakeMaker signature section:
+signature :
+ cpansign -s
+
+
+# --- MakeMaker dist_basics section:
+distclean :: realclean distcheck
+ $(NOECHO) $(NOOP)
+
+distcheck :
+ $(PERLRUN) "-MExtUtils::Manifest=fullcheck" -e fullcheck
+
+skipcheck :
+ $(PERLRUN) "-MExtUtils::Manifest=skipcheck" -e skipcheck
+
+manifest :
+ $(PERLRUN) "-MExtUtils::Manifest=mkmanifest" -e mkmanifest
+
+veryclean : realclean
+ $(RM_F) *~ */*~ *.orig */*.orig *.bak */*.bak *.old */*.old
+
+
+
+# --- MakeMaker dist_core section:
+
+dist : $(DIST_DEFAULT) $(FIRST_MAKEFILE)
+ $(NOECHO) $(ABSPERLRUN) -l -e 'print '\''Warning: Makefile possibly out of date with $(VERSION_FROM)'\''' \
+ -e ' if -e '\''$(VERSION_FROM)'\'' and -M '\''$(VERSION_FROM)'\'' < -M '\''$(FIRST_MAKEFILE)'\'';' --
+
+tardist : $(DISTVNAME).tar$(SUFFIX)
+ $(NOECHO) $(NOOP)
+
+uutardist : $(DISTVNAME).tar$(SUFFIX)
+ uuencode $(DISTVNAME).tar$(SUFFIX) $(DISTVNAME).tar$(SUFFIX) > $(DISTVNAME).tar$(SUFFIX)_uu
+
+$(DISTVNAME).tar$(SUFFIX) : distdir
+ $(PREOP)
+ $(TO_UNIX)
+ $(TAR) $(TARFLAGS) $(DISTVNAME).tar $(DISTVNAME)
+ $(RM_RF) $(DISTVNAME)
+ $(COMPRESS) $(DISTVNAME).tar
+ $(POSTOP)
+
+zipdist : $(DISTVNAME).zip
+ $(NOECHO) $(NOOP)
+
+$(DISTVNAME).zip : distdir
+ $(PREOP)
+ $(ZIP) $(ZIPFLAGS) $(DISTVNAME).zip $(DISTVNAME)
+ $(RM_RF) $(DISTVNAME)
+ $(POSTOP)
+
+shdist : distdir
+ $(PREOP)
+ $(SHAR) $(DISTVNAME) > $(DISTVNAME).shar
+ $(RM_RF) $(DISTVNAME)
+ $(POSTOP)
+
+
+# --- MakeMaker distdir section:
+create_distdir :
+ $(RM_RF) $(DISTVNAME)
+ $(PERLRUN) "-MExtUtils::Manifest=manicopy,maniread" \
+ -e "manicopy(maniread(),'$(DISTVNAME)', '$(DIST_CP)');"
+
+distdir : create_distdir distmeta
+ $(NOECHO) $(NOOP)
+
+
+
+# --- MakeMaker dist_test section:
+disttest : distdir
+ cd $(DISTVNAME) && $(ABSPERLRUN) Makefile.PL "PREFIX=/usr/local" "LDDLFLAGS= -shared"
+ cd $(DISTVNAME) && $(MAKE) $(PASTHRU)
+ cd $(DISTVNAME) && $(MAKE) test $(PASTHRU)
+
+
+
+# --- MakeMaker dist_ci section:
+
+ci :
+ $(PERLRUN) "-MExtUtils::Manifest=maniread" \
+ -e "@all = keys %{ maniread() };" \
+ -e "print(qq{Executing $(CI) @all\n}); system(qq{$(CI) @all});" \
+ -e "print(qq{Executing $(RCS_LABEL) ...\n}); system(qq{$(RCS_LABEL) @all});"
+
+
+# --- MakeMaker distmeta section:
+distmeta : create_distdir metafile
+ $(NOECHO) cd $(DISTVNAME) && $(ABSPERLRUN) -MExtUtils::Manifest=maniadd -e 'eval { maniadd({q{META.yml} => q{Module meta-data (added by MakeMaker)}}) } ' \
+ -e ' or print "Could not add META.yml to MANIFEST: $${'\''@'\''}\n"' --
+
+
+
+# --- MakeMaker distsignature section:
+distsignature : create_distdir
+ $(NOECHO) cd $(DISTVNAME) && $(ABSPERLRUN) -MExtUtils::Manifest=maniadd -e 'eval { maniadd({q{SIGNATURE} => q{Public-key signature (added by MakeMaker)}}) } ' \
+ -e ' or print "Could not add SIGNATURE to MANIFEST: $${'\''@'\''}\n"' --
+ $(NOECHO) cd $(DISTVNAME) && $(TOUCH) SIGNATURE
+ cd $(DISTVNAME) && cpansign -s
+
+
+
+# --- MakeMaker install section:
+
+install :: pure_install doc_install
+ $(NOECHO) $(NOOP)
+
+install_perl :: pure_perl_install doc_perl_install
+ $(NOECHO) $(NOOP)
+
+install_site :: pure_site_install doc_site_install
+ $(NOECHO) $(NOOP)
+
+install_vendor :: pure_vendor_install doc_vendor_install
+ $(NOECHO) $(NOOP)
+
+pure_install :: pure_$(INSTALLDIRS)_install
+ $(NOECHO) $(NOOP)
+
+doc_install :: doc_$(INSTALLDIRS)_install
+ $(NOECHO) $(NOOP)
+
+pure__install : pure_site_install
+ $(NOECHO) $(ECHO) INSTALLDIRS not defined, defaulting to INSTALLDIRS=site
+
+doc__install : doc_site_install
+ $(NOECHO) $(ECHO) INSTALLDIRS not defined, defaulting to INSTALLDIRS=site
+
+pure_perl_install :: all
+ $(NOECHO) $(MOD_INSTALL) \
+ read $(PERL_ARCHLIB)/auto/$(FULLEXT)/.packlist \
+ write $(DESTINSTALLARCHLIB)/auto/$(FULLEXT)/.packlist \
+ $(INST_LIB) $(DESTINSTALLPRIVLIB) \
+ $(INST_ARCHLIB) $(DESTINSTALLARCHLIB) \
+ $(INST_BIN) $(DESTINSTALLBIN) \
+ $(INST_SCRIPT) $(DESTINSTALLSCRIPT) \
+ $(INST_MAN1DIR) $(DESTINSTALLMAN1DIR) \
+ $(INST_MAN3DIR) $(DESTINSTALLMAN3DIR)
+ $(NOECHO) $(WARN_IF_OLD_PACKLIST) \
+ $(SITEARCHEXP)/auto/$(FULLEXT)
+
+
+pure_site_install :: all
+ $(NOECHO) $(MOD_INSTALL) \
+ read $(SITEARCHEXP)/auto/$(FULLEXT)/.packlist \
+ write $(DESTINSTALLSITEARCH)/auto/$(FULLEXT)/.packlist \
+ $(INST_LIB) $(DESTINSTALLSITELIB) \
+ $(INST_ARCHLIB) $(DESTINSTALLSITEARCH) \
+ $(INST_BIN) $(DESTINSTALLSITEBIN) \
+ $(INST_SCRIPT) $(DESTINSTALLSITESCRIPT) \
+ $(INST_MAN1DIR) $(DESTINSTALLSITEMAN1DIR) \
+ $(INST_MAN3DIR) $(DESTINSTALLSITEMAN3DIR)
+ $(NOECHO) $(WARN_IF_OLD_PACKLIST) \
+ $(PERL_ARCHLIB)/auto/$(FULLEXT)
+
+pure_vendor_install :: all
+ $(NOECHO) $(MOD_INSTALL) \
+ read $(VENDORARCHEXP)/auto/$(FULLEXT)/.packlist \
+ write $(DESTINSTALLVENDORARCH)/auto/$(FULLEXT)/.packlist \
+ $(INST_LIB) $(DESTINSTALLVENDORLIB) \
+ $(INST_ARCHLIB) $(DESTINSTALLVENDORARCH) \
+ $(INST_BIN) $(DESTINSTALLVENDORBIN) \
+ $(INST_SCRIPT) $(DESTINSTALLVENDORSCRIPT) \
+ $(INST_MAN1DIR) $(DESTINSTALLVENDORMAN1DIR) \
+ $(INST_MAN3DIR) $(DESTINSTALLVENDORMAN3DIR)
+
+doc_perl_install :: all
+ $(NOECHO) $(ECHO) Appending installation info to $(DESTINSTALLARCHLIB)/perllocal.pod
+ -$(NOECHO) $(MKPATH) $(DESTINSTALLARCHLIB)
+ -$(NOECHO) $(DOC_INSTALL) \
+ "Module" "$(NAME)" \
+ "installed into" "$(INSTALLPRIVLIB)" \
+ LINKTYPE "$(LINKTYPE)" \
+ VERSION "$(VERSION)" \
+ EXE_FILES "$(EXE_FILES)" \
+ >> $(DESTINSTALLARCHLIB)/perllocal.pod
+
+doc_site_install :: all
+ $(NOECHO) $(ECHO) Appending installation info to $(DESTINSTALLARCHLIB)/perllocal.pod
+ -$(NOECHO) $(MKPATH) $(DESTINSTALLARCHLIB)
+ -$(NOECHO) $(DOC_INSTALL) \
+ "Module" "$(NAME)" \
+ "installed into" "$(INSTALLSITELIB)" \
+ LINKTYPE "$(LINKTYPE)" \
+ VERSION "$(VERSION)" \
+ EXE_FILES "$(EXE_FILES)" \
+ >> $(DESTINSTALLARCHLIB)/perllocal.pod
+
+doc_vendor_install :: all
+ $(NOECHO) $(ECHO) Appending installation info to $(DESTINSTALLARCHLIB)/perllocal.pod
+ -$(NOECHO) $(MKPATH) $(DESTINSTALLARCHLIB)
+ -$(NOECHO) $(DOC_INSTALL) \
+ "Module" "$(NAME)" \
+ "installed into" "$(INSTALLVENDORLIB)" \
+ LINKTYPE "$(LINKTYPE)" \
+ VERSION "$(VERSION)" \
+ EXE_FILES "$(EXE_FILES)" \
+ >> $(DESTINSTALLARCHLIB)/perllocal.pod
+
+
+uninstall :: uninstall_from_$(INSTALLDIRS)dirs
+ $(NOECHO) $(NOOP)
+
+uninstall_from_perldirs ::
+ $(NOECHO) $(UNINSTALL) $(PERL_ARCHLIB)/auto/$(FULLEXT)/.packlist
+
+uninstall_from_sitedirs ::
+ $(NOECHO) $(UNINSTALL) $(SITEARCHEXP)/auto/$(FULLEXT)/.packlist
+
+uninstall_from_vendordirs ::
+ $(NOECHO) $(UNINSTALL) $(VENDORARCHEXP)/auto/$(FULLEXT)/.packlist
+
+
+# --- MakeMaker force section:
+# Phony target to force checking subdirectories.
+FORCE :
+ $(NOECHO) $(NOOP)
+
+
+# --- MakeMaker perldepend section:
+
+PERL_HDRS = \
+ $(PERL_INC)/EXTERN.h \
+ $(PERL_INC)/INTERN.h \
+ $(PERL_INC)/XSUB.h \
+ $(PERL_INC)/av.h \
+ $(PERL_INC)/cc_runtime.h \
+ $(PERL_INC)/config.h \
+ $(PERL_INC)/cop.h \
+ $(PERL_INC)/cv.h \
+ $(PERL_INC)/dosish.h \
+ $(PERL_INC)/embed.h \
+ $(PERL_INC)/embedvar.h \
+ $(PERL_INC)/fakethr.h \
+ $(PERL_INC)/form.h \
+ $(PERL_INC)/gv.h \
+ $(PERL_INC)/handy.h \
+ $(PERL_INC)/hv.h \
+ $(PERL_INC)/intrpvar.h \
+ $(PERL_INC)/iperlsys.h \
+ $(PERL_INC)/keywords.h \
+ $(PERL_INC)/mg.h \
+ $(PERL_INC)/nostdio.h \
+ $(PERL_INC)/op.h \
+ $(PERL_INC)/opcode.h \
+ $(PERL_INC)/patchlevel.h \
+ $(PERL_INC)/perl.h \
+ $(PERL_INC)/perlio.h \
+ $(PERL_INC)/perlsdio.h \
+ $(PERL_INC)/perlsfio.h \
+ $(PERL_INC)/perlvars.h \
+ $(PERL_INC)/perly.h \
+ $(PERL_INC)/pp.h \
+ $(PERL_INC)/pp_proto.h \
+ $(PERL_INC)/proto.h \
+ $(PERL_INC)/regcomp.h \
+ $(PERL_INC)/regexp.h \
+ $(PERL_INC)/regnodes.h \
+ $(PERL_INC)/scope.h \
+ $(PERL_INC)/sv.h \
+ $(PERL_INC)/thread.h \
+ $(PERL_INC)/unixish.h \
+ $(PERL_INC)/util.h
+
+$(OBJECT) : $(PERL_HDRS)
+
+
+# --- MakeMaker makefile section:
+
+$(OBJECT) : $(FIRST_MAKEFILE)
+
+# We take a very conservative approach here, but it's worth it.
+# We move Makefile to Makefile.old here to avoid gnu make looping.
+$(FIRST_MAKEFILE) : Makefile.PL $(CONFIGDEP)
+ $(NOECHO) $(ECHO) "Makefile out-of-date with respect to $?"
+ $(NOECHO) $(ECHO) "Cleaning current config before rebuilding Makefile..."
+ -$(NOECHO) $(RM_F) $(MAKEFILE_OLD)
+ -$(NOECHO) $(MV) $(FIRST_MAKEFILE) $(MAKEFILE_OLD)
+ - $(MAKE) $(USEMAKEFILE) $(MAKEFILE_OLD) clean $(DEV_NULL)
+ $(PERLRUN) Makefile.PL "PREFIX=/usr/local" "LDDLFLAGS= -shared"
+ $(NOECHO) $(ECHO) "==> Your Makefile has been rebuilt. <=="
+ $(NOECHO) $(ECHO) "==> Please rerun the $(MAKE) command. <=="
+ $(FALSE)
+
+
+
+# --- MakeMaker staticmake section:
+
+# --- MakeMaker makeaperl section ---
+MAP_TARGET = perl
+FULLPERL = /usr/bin/perl
+
+$(MAP_TARGET) :: static $(MAKE_APERL_FILE)
+ $(MAKE) $(USEMAKEFILE) $(MAKE_APERL_FILE) $@
+
+$(MAKE_APERL_FILE) : $(FIRST_MAKEFILE) pm_to_blib
+ $(NOECHO) $(ECHO) Writing \"$(MAKE_APERL_FILE)\" for this $(MAP_TARGET)
+ $(NOECHO) $(PERLRUNINST) \
+ Makefile.PL DIR= \
+ MAKEFILE=$(MAKE_APERL_FILE) LINKTYPE=static \
+ MAKEAPERL=1 NORECURS=1 CCCDLFLAGS= \
+ PREFIX=/usr/local \
+ LDDLFLAGS=' -shared'
+
+
+# --- MakeMaker test section:
+
+TEST_VERBOSE=0
+TEST_TYPE=test_$(LINKTYPE)
+TEST_FILE = test.pl
+TEST_FILES =
+TESTDB_SW = -d
+
+testdb :: testdb_$(LINKTYPE)
+
+test :: $(TEST_TYPE) subdirs-test
+
+subdirs-test ::
+ $(NOECHO) $(NOOP)
+
+
+test_dynamic :: pure_all
+ PERL_DL_NONLAZY=1 $(FULLPERLRUN) "-I$(INST_LIB)" "-I$(INST_ARCHLIB)" $(TEST_FILE)
+
+testdb_dynamic :: pure_all
+ PERL_DL_NONLAZY=1 $(FULLPERLRUN) $(TESTDB_SW) "-I$(INST_LIB)" "-I$(INST_ARCHLIB)" $(TEST_FILE)
+
+test_ : test_dynamic
+
+test_static :: pure_all $(MAP_TARGET)
+ PERL_DL_NONLAZY=1 ./$(MAP_TARGET) "-I$(INST_LIB)" "-I$(INST_ARCHLIB)" $(TEST_FILE)
+
+testdb_static :: pure_all $(MAP_TARGET)
+ PERL_DL_NONLAZY=1 ./$(MAP_TARGET) $(TESTDB_SW) "-I$(INST_LIB)" "-I$(INST_ARCHLIB)" $(TEST_FILE)
+
+
+
+# --- MakeMaker ppd section:
+# Creates a PPD (Perl Package Description) for a binary distribution.
+ppd :
+ $(NOECHO) $(ECHO) '<SOFTPKG NAME="$(DISTNAME)" VERSION="2.1.2">' > $(DISTNAME).ppd
+ $(NOECHO) $(ECHO) ' <ABSTRACT></ABSTRACT>' >> $(DISTNAME).ppd
+ $(NOECHO) $(ECHO) ' <AUTHOR>Ivo Hofacker <ivo@tbi.univie.ac.at></AUTHOR>' >> $(DISTNAME).ppd
+ $(NOECHO) $(ECHO) ' <IMPLEMENTATION>' >> $(DISTNAME).ppd
+ $(NOECHO) $(ECHO) ' <ARCHITECTURE NAME="x86_64-linux-thread-multi-5.10" />' >> $(DISTNAME).ppd
+ $(NOECHO) $(ECHO) ' <CODEBASE HREF="" />' >> $(DISTNAME).ppd
+ $(NOECHO) $(ECHO) ' </IMPLEMENTATION>' >> $(DISTNAME).ppd
+ $(NOECHO) $(ECHO) '</SOFTPKG>' >> $(DISTNAME).ppd
+
+
+# --- MakeMaker pm_to_blib section:
+
+pm_to_blib : $(FIRST_MAKEFILE) $(TO_INST_PM)
+ $(NOECHO) $(ABSPERLRUN) -MExtUtils::Install -e 'pm_to_blib({@ARGV}, '\''$(INST_LIB)/auto'\'', q[$(PM_FILTER)], '\''$(PERM_DIR)'\'')' -- \
+ RNA.pm $(INST_LIBDIR)/RNA.pm
+ $(NOECHO) $(TOUCH) pm_to_blib
+
+
+# --- MakeMaker selfdocument section:
+
+
+# --- MakeMaker postamble section:
+
+
+# End.
git://source.jalview.org / jabaws.git / blobdiff