JWS-112 Bumping version of ClustalO (src, binaries and windows) to version 1.2.4.

[jabaws.git] / binaries / src / clustalo / src / clustal / symmatrix.h

diff --git a/binaries/src/clustalo/src/clustal/symmatrix.h b/binaries/src/clustalo/src/clustal/symmatrix.h
index 8f80922..73fe890 100644 (file)
--- a/binaries/src/clustalo/src/clustal/symmatrix.h
+++ b/binaries/src/clustalo/src/clustal/symmatrix.h
@@ -13,7 +13,7 @@
  ********************************************************************/
 
 /*
- *  RCS $Id: symmatrix.h 216 2011-03-19 10:11:53Z andreas $
+ *  RCS $Id: symmatrix.h 288 2013-07-29 13:15:50Z andreas $
  */
 
 /**
@@ -36,6 +36,11 @@
 #ifndef CLUSTALO_SYMMATRIX_H
 #define CLUSTALO_SYMMATRIX_H
 
+/* ugly, but necessary for cross-checking of names in distmat and
+ * mseq */
+#include "seq.h"
+
+
 
 /**
  * @brief symmetric matrix structure
@@ -72,9 +77,9 @@ extern void
 FreeSymMatrix(symmatrix_t **symmat);
 
 extern void
-SymMatrixPrint(symmatrix_t *symmat, char **labels,  const char *path);
+SymMatrixPrint(symmatrix_t *symmat, char **labels,  const char *path, bool bPercID);
 
 extern int
-SymMatrixRead(char *pcFileIn, symmatrix_t **prSymMat_p);
+SymMatrixRead(char *pcFileIn, symmatrix_t **prSymMat_p, mseq_t *prMSeq);
 
 #endif