********************************************************************/
/*
- * RCS $Id: hhfullalignment.h 243 2011-05-31 13:49:19Z fabian $
+ * RCS $Id: hhfullalignment.h 284 2013-06-12 10:10:11Z fabian $
*/
//////////////////////////////////////////////////////////////////////////////
FullAlignment(int maxseqdis=MAXSEQDIS);
~FullAlignment();
void FreeMemory();
- int Build(HMM& q, Hit& hit);
+ int Build(HMM& q, Hit& hit, char zcError[]);
void PrintHeader(FILE* outf, HMM& q, Hit& hit);
void PrintHHR(FILE* outf, Hit& hit);
void PrintA2M(FILE* outf, Hit& hit);