JWS-112 Bumping version of ClustalO (src, binaries and windows) to version 1.2.4.

[jabaws.git] / binaries / src / clustalo / src / hhalign / hhhalfalignment-C.h

diff --git a/binaries/src/clustalo/src/hhalign/hhhalfalignment-C.h b/binaries/src/clustalo/src/hhalign/hhhalfalignment-C.h
index 25c4e3c..5579b73 100644 (file)
--- a/binaries/src/clustalo/src/hhalign/hhhalfalignment-C.h
+++ b/binaries/src/clustalo/src/hhalign/hhhalfalignment-C.h
@@ -15,7 +15,7 @@
  ********************************************************************/
 
 /*
- *  RCS $Id: hhhalfalignment-C.h 227 2011-03-28 17:03:09Z fabian $
+ *  RCS $Id: hhhalfalignment-C.h 315 2016-12-15 17:18:30Z fabian $
  */
 
 // hhfullalignment.C
@@ -47,6 +47,7 @@ using std::endl;
 #include "hhalignment.h" // class Alignment
 #include "hhhit.h"
 #endif
+//#include "new_new.h" /* memory tracking */
 
 /////////////////////////////////////////////////////////////////////////////
 /////////////////////////////////////////////////////////////////////////////
@@ -63,10 +64,10 @@ HalfAlignment::HalfAlignment(int maxseqdis)
   n=0; 
   sname=seq=NULL; 
   nss_dssp = nss_pred = nss_conf = nsa_dssp = ncons= -1;
-  h = new(int[maxseqdis]);   //h[k] = next position of sequence k to be written
-  s = new(char*[maxseqdis]);  //s[k][h] = character in column h, sequence k of output alignment
-  l = new(int*[maxseqdis]);   //counts non-gap residues: l[k][i] = index of last residue AT OR BEFORE match state i in seq k
-  m = new(int*[maxseqdis]);   //counts positions:        m[k][i] = position of match state i in string seq[k]  
+  h = new int[maxseqdis];   //h[k] = next position of sequence k to be written
+  s = new char*[maxseqdis];  //s[k][h] = character in column h, sequence k of output alignment
+  l = new int*[maxseqdis];   //counts non-gap residues: l[k][i] = index of last residue AT OR BEFORE match state i in seq k
+  m = new int*[maxseqdis];   //counts positions:        m[k][i] = position of match state i in string seq[k]  
 }
 
 /////////////////////////////////////////////////////////////////////////////////////