********************************************************************/
/*
- * RCS $Id: hhhitlist.h 243 2011-05-31 13:49:19Z fabian $
+ * RCS $Id: hhhitlist.h 284 2013-06-12 10:10:11Z fabian $
*/
// hhhitlist.h
// Print alignments of query sequences against hit sequences
int PrintAlignments(
#ifdef CLUSTALO
- char **ppcFirstProf, char **ppcSecndProf,
+ char **ppcFirstProf, char **ppcSecndProf, char zcAux[], char zcError[],
#endif
HMM& q, char* outfile, char outformat=0);