JWS-112 Bumping version of ClustalO (src, binaries and windows) to version 1.2.4.

[jabaws.git] / binaries / src / clustalo / src / squid / Makefile.in

diff --git a/binaries/src/clustalo/src/squid/Makefile.in b/binaries/src/clustalo/src/squid/Makefile.in
index fe4ec26..8ad9264 100644 (file)
--- a/binaries/src/clustalo/src/squid/Makefile.in
+++ b/binaries/src/clustalo/src/squid/Makefile.in
@@ -96,7 +96,10 @@ AMTAR = @AMTAR@
 # need DCLUSTALO here to enable Clustal specific squid patches
 # CLUSTALO is also defined in ../config.h which is included by squid.h
 # but some files do not include squid.h
-AM_CFLAGS = -DCLUSTALO -DSRE_STRICT_ANSI @AM_CFLAGS@ 
+# not using -DSRE_STRICT_ANSI allows to use gzipped files as input and lists user *and* system time during timings
+# not sure if there are any downsides
+# AM_CFLAGS = -DCLUSTALO -DSRE_STRICT_ANSI @AM_CFLAGS@ 
+AM_CFLAGS = -DCLUSTALO @AM_CFLAGS@ 
 AM_CXXFLAGS = @AM_CXXFLAGS@
 AM_LDFLAGS = @AM_LDFLAGS@
 AR = @AR@