JWS-112 Bumping version of ClustalW (src, binaries and windows) to version 2.1.

[jabaws.git] / binaries / src / clustalw / src / alignment / Alignment.cpp

diff --git a/binaries/src/clustalw/src/alignment/Alignment.cpp b/binaries/src/clustalw/src/alignment/Alignment.cpp
index 1b54c20..8101a90 100644 (file)
--- a/binaries/src/clustalw/src/alignment/Alignment.cpp
+++ b/binaries/src/clustalw/src/alignment/Alignment.cpp
@@ -806,6 +806,7 @@ void Alignment::calculateMaxLengths()
 /*
  * This function checks to see if all names are different. It returns true if they
  * are all different, and false if there are 2 the same.
+ * currently quadratic - would be nice to speed up
  */
 bool Alignment::checkAllNamesDifferent(string *offendingSeq)
 {