JWS-117 Compiled all tools with ./compilebin.sh and some were missing related files.

[jabaws.git] / binaries / src / compilebin.sh

diff --git a/binaries/src/compilebin.sh b/binaries/src/compilebin.sh
index 441cdb0..b0e478b 100644 (file)
--- a/binaries/src/compilebin.sh
+++ b/binaries/src/compilebin.sh
@@ -12,10 +12,11 @@ cd ..
 
 echo "Compiling Clustal Omega..."
 cd clustalo
-make clean
 chmod +x ./configure 
 ./configure
+make clean
 make
+chmod +x src/clustalo
 cd ..
 
 echo "Compiling Mafft..."
@@ -51,6 +52,7 @@ chmod +x install
 ./install clean
 ./install t_coffee -force
 chmod +x t_coffee_source/t_coffee
+export PATH=$PATH:$PWD/t_coffee_source
 cd ..
 
 echo "Compiling DisEMBL..."
@@ -84,3 +86,27 @@ make
 echo "DONE"
 cd ..
 
+echo "Compiling Vienna ..."
+cd ViennaRNA
+chmod +x ./configure
+./configure
+make clean
+make
+echo "DONE"
+cd ..
+
+echo "Compiling GLProbs ..."
+cd GLProbs-1.0
+make clean
+make
+echo "DONE"
+cd ..
+
+
+echo "Compiling MSAProbs-0.9.7 ..."
+cd MSAProbs-0.9.7/MSAProbs
+make clean
+make
+echo "DONE"
+cd ../..
+