--- /dev/null
+PREFIX = /usr/local
+LIBDIR = $(PREFIX)/libexec/mafft
+
+#MNO_CYGWIN = -mno-cygwin
+
+INSTALL = install
+
+PROGS = mxscarnamod
+SCARNASRC = mxscarna_src/* mxscarna_src/*/*
+
+all : $(PROGS)
+ cp $(PROGS) ../binaries
+ chmod 755 ../binaries/*
+ @echo done.
+
+univscript: univscript.tmpl Makefile
+ sed "s:_PROGS:$(PROGS):" univscript.tmpl > univscript
+
+
+mxscarnamod: $(SCARNASRC)
+ $(MAKE) CFLAGS1="$(MNO_CYGWIN)" -C mxscarna_src
+ mv mxscarna_src/mxscarna mxscarnamod
+
+
+clean :
+ rm -f *.o *.a *.exe *~ $(PROGS)
+# rm -f ../binaries/* ../scripts/*
+ $(MAKE) clean -C mxscarna_src
+
+install : all
+ mkdir -p $(LIBDIR)
+ chmod 755 $(LIBDIR)
+ chmod 755 $(PROGS)
+ $(INSTALL) $(PROGS) $(LIBDIR)