remove mafft extensions - we do not support them

[jabaws.git] / binaries / src / mafft / extensions / mxscarna_src / vienna / params.h

diff --git a/binaries/src/mafft/extensions/mxscarna_src/vienna/params.h b/binaries/src/mafft/extensions/mxscarna_src/vienna/params.h
deleted file mode 100644 (file)
index 46d6122..0000000
--- a/binaries/src/mafft/extensions/mxscarna_src/vienna/params.h
+++ /dev/null
@@ -1,32 +0,0 @@
-#include "energy_const.h"
-typedef struct {
-  int id;
-  int stack[NBPAIRS+1][NBPAIRS+1];
-  int hairpin[31];
-  int bulge[MAXLOOP+1];
-  int internal_loop[MAXLOOP+1];
-  int mismatchI[NBPAIRS+1][5][5];
-  int mismatchH[NBPAIRS+1][5][5];
-  int mismatchM[NBPAIRS+1][5][5];
-  int dangle5[NBPAIRS+1][5];
-  int dangle3[NBPAIRS+1][5];
-  int int11[NBPAIRS+1][NBPAIRS+1][5][5];
-  int int21[NBPAIRS+1][NBPAIRS+1][5][5][5];
-  int int22[NBPAIRS+1][NBPAIRS+1][5][5][5][5];
-  int F_ninio[5];
-  double lxc;
-  int MLbase;
-  int MLintern[NBPAIRS+1];
-  int MLclosing;
-  int TerminalAU;
-  int DuplexInit;
-  int TETRA_ENERGY[200];
-  char Tetraloops[1401];
-  int Triloop_E[40];
-  char Triloops[241];
-  double temperature;
-}  paramT;
-
-extern paramT *scale_parameters(void);
-extern paramT *copy_parameters(void);
-extern paramT *set_parameters(paramT *dest);