Removing old version of mafft to replace with the new
[jabaws.git] / binaries / src / mafft / test / sample.fftns2
diff --git a/binaries/src/mafft/test/sample.fftns2 b/binaries/src/mafft/test/sample.fftns2
deleted file mode 100644 (file)
index 14bc819..0000000
+++ /dev/null
@@ -1,468 +0,0 @@
->     1== M63632   1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91]
-MN-----------------GTE--GDNFYVP----FS---------------------NK
-TGLARSPY----------------------EYPQY-YLAEPWK---------YSALAAYM
-FFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-FTVTMYTSMN-GY
-FV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMGN-FRFGNTHAIMGVAF
-TWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDYYTLNPNFNNESYVVYMFVVHF
-LVPFVIIFFCYGRLLCTV------------------------------------------
-------------------------------------------------------------
----------------------KEAAAAQQ----------ESASTQKA-------------
-----------------EKEVTRMVVLMVIGFLVCWVPYASVAFYIFTHQGSD---FGATF
-MTLPAFFAKSSALYNPVIYILMNKQFRNCMITT----LCCGKNPLGDDE--SGASTSKTE
-VSS---------------------------------------------------------
---------------------------------VS-TSPVSP-A---
->     2== U22180   1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94]
-MN-----------------GTE--GPNFYVP----FS---------------------NI
-TGVVRSPF----------------------EQPQY-YLAEPWQ---------FSMLAAYM
-FLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-FTTTLYTSLH-GY
-FV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGVAF
-TWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHF
-TIPMIVIFFCYGQLVFTV------------------------------------------
-------------------------------------------------------------
----------------------KEAAAQQQ----------ESATTQKA-------------
-----------------EKEVTRMVIIMVIFFLICWLPYASVAMYIFTHQGSN---FGPIF
-MTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTS----LCCGKNPLGDDE--ASATASKTE
-------------------------------------------------------------
------------------------------------TSQVAP-A---
->     3== M92038   1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9
-MN-----------------GTE--GINFYVP----MS---------------------NK
-TGVVRSPF----------------------EYPQY-YLAEPWK---------YRLVCCYI
-FFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-FTVTFYTAWN-GY
-FV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMGN-FRFSATHAMMGIAF
-TWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDYYTHNPDYHNESYVLYMFVIHF
-IIPVVVIFFSYGRLICKV------------------------------------------
-------------------------------------------------------------
----------------------REAAAQQQ----------ESATTQKA-------------
-----------------EKEVTRMVILMVLGFMLAWTPYAVVAFWIFTNKGAD---FTATL
-MAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITT----ICCGKNPFGDEDVSSTVSQSKTE
-VSS---------------------------------------------------------
---------------------------------VS-SSQVSP-A---
->     4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish
-MN-----------------GTE--GKNFYVP----MS---------------------NR
-TGLVRSPF----------------------EYPQY-YLAEPWQ---------FKILALYL
-FFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-FTVTFYTAIN-GY
-FV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSSHAFAGIAF
-TWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDYYTLNPDYNNESYVIYMFVCHF
-ILPVAVIFFTYGRLVCTV------------------------------------------
-------------------------------------------------------------
----------------------KAAAAQQQ----------DSASTQKA-------------
-----------------EREVTKMVILMVFGFLIAWTPYATVAAWIFFNKGAD---FSAKF
-MAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTT----IFCGKNPLGDDE-SSTVSTSKTE
-VSS---------------------------------------------------------
---------------------------------------VSP-A---
->     5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish
-MN-----------------GTE--GNNFYVP----LS---------------------NR
-TGLVRSPF----------------------EYPQY-YLAEPWQ---------FKLLAVYM
-FFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-FTVTFYTAIN-GY
-FA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSTHASAGIAF
-TWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDYYTLNPEYNNESYVLYMFICHF
-ILPVTIIFFTYGRLVCTV------------------------------------------
-------------------------------------------------------------
----------------------KAAAAQQQ----------DSASTQKA-------------
-----------------EREVTKMVILMVLGFLVAWTPYATVAAWIFFNKGAA---FSAQF
-MAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTT----LFCGKNPLGDEE-SSTVSTSKTE
-VSS---------------------------------------------------------
---------------------------------------VSP-A---
->     6== L11864   1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208-
-MK-----------------QVPEFHEDFYIPIPLDIN---------------------NL
-S--AYSPF----------------------LVPQD-HLGNQGI---------FMAMSVFM
-FFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-SPLSFYSFFN-RY
-FI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLGN-FTFKTPHAIAGCIL
-PWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDWYTTNNKYNNESYVMFLFCFCF
-AVPFGTIVFCYGQLLITL------------------------------------------
-------------------------------------------------------------
----------------------KLAAKAQA----------DSASTQKA-------------
-----------------EREVTKMVVVMVLGFLVCWAPYASFSLWIVSHRGEE---FDLRM
-ATIPSCLSKASTVYNPVIYVLMNKQFRSCMM-K----MVCGKN-IEEDE--ASTSSQVTQ
-VSS---------------------------------------------------------
---------------------------------------VAPEK---
->     7== M13299   1 human BCP <>[Science232(4747),193-202'86]
-MR-----------------KMS--EEEFYL-----FK---------------------NI
-SSV--GPW----------------------DGPQY-HIAPVWA---------FYLQAAFM
-GTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS-VFPVFVASCN-GY
-FV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGN-FRFSSKHALTVVLA
-TWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCF
-IVPLSLICFSYTQLLRAL------------------------------------------
-------------------------------------------------------------
----------------------KAVAAQQQ----------ESATTQKA-------------
-----------------EREVSRMVVVMVGSFCVCYVPYAAFAMYMVNNRNHG---LDLRL
-VTIPSFFSKSACIYNPIIYCFMNKQFQACIM-K----MVCGKA-MTDES--DTCSSQKTE
-VST---------------------------------------------------------
---------------------------------VS-STQVGP-N---
->     8=opsin, greensensitive  human (fragment) S07060
-------------------------------------------------------------
-------------------------------------------------------------
---------------------------------------DLAETVIA-STISIVNQVS-GY
-FV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLAIVGIAF
-SWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCC
-ITPLSIIVLCYLQVWLAI------------------------------------------
-------------------------------------------------------------
----------------------RAVAKQQK----------ESESTQKA-------------
-----------------EKEVTRMVVVMVLAFC----------------------------
-------------------------------------------------------------
-------------------------------------------------------------
-----------------------------------------------
->     9== K03494   1 human GCP <>[Science232(4747),193-202'86]
-MAQQWSLQRLAGRHPQDSYEDSTQSSIFTYT----NS---------------------NS
-T---RGPF----------------------EGPNY-HIAPRWV---------YHLTSVWM
-IFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISVVNQVY-GY
-FV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGN-VRFDAKLAIVGIAF
-SWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCC
-ITPLSIIVLCYLQVWLAI------------------------------------------
-------------------------------------------------------------
----------------------RAVAKQQK----------ESESTQKA-------------
-----------------EKEVTRMVVVMVLAFCFCWGPYAFFACFAAANPGYP---FHPLM
-AALPAFFAKSATIYNPVIYVFMNRQFRNCILQL----F-----GKKVDDGSELSSASKTE
-VSS---------------------------------------------------------
---------------------------------V---SSVSP-A---
->    10== Z68193   1 human Red Opsin <>[]
-MAQQWSLQRLAGRHPQDSYEDSTQSSIFTYT----NS---------------------NS
-T---RGPF----------------------EGPNY-HIAPRWV---------YHLTSVWM
-IFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISIVNQVS-GY
-FV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLAIVGIAF
-SWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCC
-IIPLAIIMLCYLQVWLAI------------------------------------------
-------------------------------------------------------------
----------------------RAVAKQQK----------ESESTQKA-------------
-----------------EKEVTRMVVVMIFAYCVCWGPYTFFACFAAANPGYA---FHPLM
-AALPAYFAKSATIYNPVIYVFMNRQFRNCILQL----F-----GKKVDDGSELSSASKTE
-VSS---------------------------------------------------------
---------------------------------V---SSVSP-A---
->    11== M92036   1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92]
-MTEAWNVAVFAARRSRDD-DDTTRGSVFTYT----NT---------------------NN
-T---RGPF----------------------EGPNY-HIAPRWV---------YNLVSFFM
-IIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-STISVFNQIF-GY
-FI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFGN-IKFDSKLAIIGIVF
-SWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSVELGCQSFMLTLMITCC
-FLPLFIIIVCYLQVWMAI------------------------------------------
-------------------------------------------------------------
----------------------RAVAAQQK----------ESESTQKA-------------
-----------------EREVSRMVVVMIVAFCICWGPYASFVSFAAANPGYA---FHPLA
-AALPAYFAKSATIYNPVIYVFMNRQFRNCIMQL----F-----GKKVDDGSEASTTSRTE
-VSS---------------------------------------------------------
---------------------------------VS-NSSVAP-A---
->    12== M62903   1 chicken visual pigment <>[BBRC173,1212-1217'90]
-MAA-WEAAFAARRRHEE--EDTTRDSVFTYT----NS---------------------NN
-T---RGPF----------------------EGPNY-HIAPRWV---------YNLTSVWM
-IFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-STISVINQIS-GY
-FI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCKPFGN-IKFDGKLAVAGILF
-SWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSDPGVQSYMVVLMVTCC
-FFPLAIIILCYLQVWLAI------------------------------------------
-------------------------------------------------------------
----------------------RAVAAQQK----------ESESTQKA-------------
-----------------EKEVSRMVVVMIVAYCFCWGPYTFFACFAAANPGYA---FHPLA
-AALPAYFAKSATIYNPIIYVFMNRQFRNCILQL----F-----GKKVDDGSEVST-SRTE
-VSS---------------------------------------------------------
---------------------------------VS-NSSVSP-A---
->    13== S75720   1 chicken P-opsin <>[Science267(5203),1502-1506'95]
-MS-----------------SNSSQAP----------P---------------------NG
-T---PGPF----------------------DGPQWPYQAPQST---------YVGVAVLM
-GTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-SSVSLSNNIN-GF
-FV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLGD-FQFQRRHAVSGCAF
-TWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNWYTGGSNN--NSYILSLFVTCF
-VLPLSLILFSYTNLLLTL------------------------------------------
-------------------------------------------------------------
----------------------RAAAAQQK----------EADTTQRA-------------
-----------------EREVTRMVIVMVMAFLLCWLPYSTFALVVATHKGII---IQPVL
-ASLPSYFSKTATVYNPIIYVFMNKQFQSCLLEM----LCCGYQPQRTGKASPGTPGPHAD
-VTA---------------------------------------------------------
---------------------------------AGLRNKVMP-AHPV
->    14== M17718   1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87]
-MESGNVSSSLFGNVSTALRPEA----RLSA---E------------------------TR
-LLGWNVPP----------------------EELR--HIPEHWLTYPEPPESMNYLLGTLY
-IFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK--TPIFIYNSFH-QG
-YA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEG--KMTHGKAIAMIIF
-IYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVACIFFFSF
-VCPTTMITYYYSQIVGHVFSH---------------------------------------
-------------------------------------------------------------
---------------------EKALRDQAKKMNVESLRSNVDKNKETA-------------
-----------------EIRIAKAAITICFLFFCSWTPYGVMSLIGAFGDKTL---LTPGA
-TMIPACACKMVACIDPFVYAISHPRYRMELQKRCPW-LALNEKAPES----SAVASTSTT
-QEP---------------------------------------------------------
-------------------------------------QQTTA-A---
->    15== X65879   1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92
-MEYHNVSSVL-GNVSSVLRPDA----RLSA---E------------------------SR
-LLGWNVPP----------------------DELR--HIPEHWLIYPEPPESMNYLLGTLY
-IFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK--TPIFIYNSFH-QG
-YA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPMEG--KMTHGKAIAMIIF
-IYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVACIFFFSF
-VCPTTMITYYYSQIVGHVFSH---------------------------------------
-------------------------------------------------------------
---------------------EKALRDQAKKMNVDSLRSNVDKSKEAA-------------
-----------------EIRIAKAAITICFLFFASWTPYGVMSLIGAFGDKTL---LTPGA
-TMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPW-LAISEKAPES----RAAISTSTT
-QEQ---------------------------------------------------------
-------------------------------------QQTTA-A---
->    16== M17730   1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87]
-ME------PLCNASEPPLRPEA----R-SSGNGD------------------------LQ
-FLGWNVPP----------------------DQIQ--YIPEHWLTQLEPPASMHYMLGVFY
-IFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIF--NSFH-RG
-FAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKAVIMNII
-IWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGTIFFFSF
-VCPTLMILYYYSQIVGHVFSH---------------------------------------
-------------------------------------------------------------
---------------------EKALREQAKKMNVESLRSNVDKSKETA-------------
-----------------EIRIAKAAITICFLFFVSWTPYGVMSLIGAFGDKSL---LTQGA
-TMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPW-LGVNEKSGEI----SSAQSTTTQ
-EQ----------------------------------------------------------
-------------------------------------QQTTA-A---
->    17== X65880   1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92
-MD------ALCNASEPPLRPEA----RMSSGSDE------------------------LQ
-FLGWNVPP----------------------DQIQ--YIPEHWLTQLEPPASMHYMLGVFY
-IFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIFIYNSFH-RG
-FA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKAVIMNII
-IWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGTIFLFSF
-VVPTLMILYYYSQIVGHVFNH---------------------------------------
-------------------------------------------------------------
---------------------EKALREQAKKMNVESLRSNVDKSKETA-------------
-----------------EIRIAKAAITICFLFFVSWTPYGVMSLIGAFGDKSL---LTPGA
-TMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPW-LGVNEKSGEA----SSAQSTTTQ
-EQT---------------------------------------------------------
-------------------------------------QQTSA-A---
->    18== D50584   1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1
-MT-----------NATGPQMAYYGAASMDFGYPE------------------------GV
-SIVDFVRP----------------------EIKP--YVHQHWYNYPPVNPMWHYLLGVIY
-LFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-VPFFTYNCFSGGV
-WM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFNG-PKLTTGKAVVFALI
-SWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDYLT--QDFNTFSYNIFIFVFDY
-FLPAAIIVFSYVFIVKAIFAH---------------------------------------
-------------------------------------------------------------
---------------------EAAMRAQAKKMNVSTLRS-NEADAQRA-------------
-----------------EIRIAKTALVNVSLWFICWTPYALISLKGVMGDTSG---ITPLV
-STLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPW-FCVHETETKS-NDDSQSNSTVAQ
-------------------------------------------------------------
----------------------------------------DK-A---
->    19== D50583   1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1
-MA-----------NVTGPQMAFYGSGAATFGYPE------------------------GM
-TVADFVPD----------------------RVKH--MVLDHWYNYPPVNPMWHYLLGVVY
-LFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-FPPFCYNCFSGGR
-WM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFNG-PKLTQGKATFMCGL
-AWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDYFT--RDMNTITYNICIFIFDF
-FLPASVIVFSYVFIVKAIFAH---------------------------------------
-------------------------------------------------------------
---------------------EAAMRAQAKKMNVTNLRS-NEAETQRA-------------
-----------------EIRIAKTALVNVSLWFICWTPYAAITIQGLLGNAEG---ITPLL
-TTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPW-FCVHEKDPND-VEENQSSNTQTQ
-------------------------------------------------------------
----------------------------------------EK-S---
->    20== K02320   1 D.melanogaster opsin <>[Cell40,851-858'85]
-ME-----SFAVAAAQLGPHFA-----PLS-----------------------------NG
-SVVDKVTP----------------------DMAH--LISPYWNQFPAMDPIWAKILTAYM
-IMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLYF-ET
-WV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALGKM--
--------------------------YVPEGNLTSCGIDYLE--RDWNPRSYLIFYSIFVY
-YIPLFLICYSYWFIIAAVSAH---------------------------------------
-------------------------------------------------------------
---------------------EKAMREQAKKMNVKSLRS-SEDAEKSA-------------
-----------------EGKLAKVALVTITLWFMAWTPYLVINCMGLFKF-EG---LTPLN
-TIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPC-CVFGKVDDGK-SSDAQSQATASE
-AE----------------------------------------------------------
----------------------------------------SK-A---
->    21== K02315   1 D.melanogaster ninaE <>[Cell40,839-850'85]
-ME-----SFAVAAAQLGPHFA-----PLS-----------------------------NG
-SVVDKVTP----------------------DMAH--LISPYWNQFPAMDPIWAKILTAYM
-IMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLYF-ET
-WV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALGKIAY
-IWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIFYSIFVY
-YIPLFLICYSYWFIIAAVSAH---------------------------------------
-------------------------------------------------------------
---------------------EKAMREQAKKMNVKSLRS-SEDAEKSA-------------
-----------------EGKLAKVALVTITLWFMAWTPYLVINCMGLFKF-EG---LTPLN
-TIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPC-CVFGKVDDGK-SSDAQSQATASE
-AE----------------------------------------------------------
----------------------------------------SK-A---
->    22== X65877   1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204'
-MD-----SFAAVATQLGPQFA-----APS-----------------------------NG
-SVVDKVTP----------------------DMAH--LISPYWDQFPAMDPIWAKILTAYM
-IIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLYF-ET
-WV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALGKIAY
-IWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIFYSIFVY
-YIPLFLICYSYWFIIAAVSAH---------------------------------------
-------------------------------------------------------------
---------------------EKAMREQAKKMNVKSLRS-SEDADKSA-------------
-----------------EGKLAKVALVTISLWFMAWTPYLVINCMGLFKF-EG---LTPLN
-TIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPC-CVFGKVDDGK-SSEAQSQATTSE
-AE----------------------------------------------------------
----------------------------------------SK-A---
->    23== M12896   1 D.melanogaster Rh2 <>[Cell44,705-710'86]
-MERSHLPETPFDLAHSGPRFQ-----AQSSG---------------------------NG
-SVLDNVLP----------------------DMAH--LVNPYWSRFAPMDPMMSKILGLFT
-LAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFYY-ET
-WV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTSIMKILF
-IWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDYMT--RMWNPRSYLITYSLFVY
-YTPLFLICYSYWFIIAAVAAH---------------------------------------
-------------------------------------------------------------
---------------------EKAMREQAKKMNVKSLRS-SEDCDKSA-------------
-----------------EGKLAKVALTTISLWFMAWTPYLVICYFGLFKI-DG---LTPLT
-TIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPM-CVFGNTDEPKPDAPASDTETTSE
-AD----------------------------------------------------------
----------------------------------------SK-A---
->    24== X65878   1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92
-MERSLLPEPPLAMALLGPRFE-----AQTGG---------------------------NR
-SVLDNVLP----------------------DMAP--LVNPHWSRFAPMDPTMSKILGLFT
-LVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFYY-ET
-WV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTSIMKIAF
-IWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDYMT--RQWNPRSYLITYSLFVY
-YTPLFMICYSYWFIIATVAAH---------------------------------------
-------------------------------------------------------------
---------------------EKAMRDQAKKMNVKSLRS-SEDCDKSA-------------
-----------------ENKLAKVALTTISLWFMAWTPYLIICYFGLFKI-DG---LTPLT
-TIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPM-CVCGTTDEPKPDAPPSDTETTSE
-AE----------------------------------------------------------
----------------------------------------SK-D---
->    25== U26026   1 Apis mellifera long-wavelength rhodopsin <>[]
-MI-----------AVSGPSYE-----AFSYGGQARFN---------------------NQ
-TVVDKVPP----------------------DMLH--LIDANWYQYPPLNPMWHGILGFVI
-GMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-SPPMVINCYY-ET
-WV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSG-KPLSINGALIRIIA
-IWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDYFN--RGLLSASYLVCYGIWVY
-FVPLFLIIYSYWFIIQAVAAH---------------------------------------
-------------------------------------------------------------
---------------------EKNMREQAKKMNVASLRS-SENQNTSA-------------
-----------------ECKLAKVALMTISLWFMAWTPYLVINFSGIFNL-VK---ISPLF
-TIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPS-LAC-AAEPSS-DAVSTTSGTTTV
-TDN---------------------------------------------------------
-------------------------------------EK-SN-A---
->    26== L03781   1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93]
-M-------------ANQLSYS-----SLGWPYQP------------------------NA
-SVVDTMPK----------------------EMLY--MIHEHWYAFPPMNPLWYSILGVAM
-IILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-MPTMTSNCFA-ET
-WI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMAA-APLTHKKATLLLLF
-VWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDYLT--KDWSSASYVVIYGLAVY
-FLPLITMIYCYFFIVHAVAEH---------------------------------------
-------------------------------------------------------------
---------------------EKQLREQAKKMNVASLRANADQQKQSA-------------
-----------------ECRLAKVAMMTVGLWFMAWTPYLIISWAGVFSSGTR---LTPLA
-TIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPS-LACGSGESGS-DVKSEASATTTM
-EEK---------------------------------------------------------
-------------------------------------PKIPE-A---
->    27== X07797   1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88]
-MVE-----------------------STTLVNQTWWY---------------------NP
-TVD----------------------------------IHPHWAKFDPIPDAVYYSVGIFI
-GVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGFPLKTISAFM-KK
-WI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMAASKKMSHRRAFLMIIF
-VWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDYLS--TDPSTRSFILCMYFCGF
-MLPIIIIAFCYFNIVMSVSNH---------------------------------------
-------------------------------------------------------------
---------------------EKEMAAMAKRLNAKELR--KAQAGASA-------------
-----------------EMKLAKISMVIITQFMLSWSPYAIIALLAQFGPAEW---VTPYA
-AELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQFDEKECEDANDAEEEVVA
-SER--GGESRDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PPQGYPPQGAYPPPQGY
-PPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAYQ-A---
->    28== X70498   1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93]
-MGR-----------------------DLR-DNETWWY---------------------NP
-SIV----------------------------------VHPHWREFDQVPDAVYYSLGIFI
-GICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFL-KK
-WI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIF
-VWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDYIS--RDSTTRSNILCMFILGF
-FGPILIIFFCYFNIVMSVSNH---------------------------------------
-------------------------------------------------------------
---------------------EKEMAAMAKRLNAKELR--KAQAGANA-------------
-----------------EMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEW---VTPYA
-AQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKETEDDKDAETEIPA
-GESSDAAPSADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPPQGYPPQGY--PPQGY
-PPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQGVDNQAYQ-A---
->    29== L21195   1 human serotonin 5-HT7 receptor protein <placenta and fetal bra
-MMDVNSSGRPDLYGHLRSFL-----LPEVGRGLPDLSPDGGADPVAGSWAPHLLS---EV
-TASPAPTW------------DAPPDNASGCGEQIN------------YGRVEKVVIGSIL
-TLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDLIGGK
-WI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAKMILS
-VWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIYSTAVAF
-YIPMSVMLFMYYQIYKAAR-----------------------------------------
----------KSAAKHKFPGFPRVEPDSVIAL-----------------------------
---------------------NGIVKLQKEVEECANLSRLL--------------------
-----KHERKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWV
-ERTFLWLGYANSLINPFIYAFFNRDLRTTYRSL----L---QCQYRNINRKLSAAGMHEA
-LKLAERPERPEFVLQNADYCRKK-------------------------------------
-------------------------------------------GHDS
->    30== L15228   1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93]
-M-------------------------------------------------PHLLSGFLEV
-TASPAPTW------------DAPPDNVSGCGEQIN------------YGRVEKVVIGSIL
-TLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDLIGGK
-WI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAKMILS
-VWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIYSTAVAF
-YIPMSVMLFMYYQIYKAAR-----------------------------------------
----------KSAAKHKFPGFPRVQPESVISL-----------------------------
---------------------NGVVKLQKEVEECANLSRLL--------------------
-----KHERKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWV
-ERTCLWLGYANSLINPFIYAFFNRDLRPTSRSL----L---QCQYRNINRKLSAAGMHEA
-LKLAERPERSEFVLQNSDHCGKK-------------------------------------
-------------------------------------------GHDT
->    31=p A47425 serotonin receptor 5HT-7 - rat
-M-------------------------------------------------PHLLSGFLEV
-TASPAPTW------------DAPPDNVSGCGEQIN------------YGRVEKVVIGSIL
-TLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDLIGGK
-WI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAKMILS
-VWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIYSTAVAF
-YIPMSVMLFMYYQIYKAAR-----------------------------------------
----------KSAAKHKFPGFPRVQPESVISL-----------------------------
---------------------NGVVKLQKEVEECANLSRLL--------------------
-----KHERKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWV
-ERTCLWLGYANSLINPFIYAFFNRDLRTTYRSL----L---QCQYRNINRKLSAAGMHEA
-LKLAERPERSEFVLQNSDHCGKK-------------------------------------
-------------------------------------------GHDT
->    32== M83181   1 human serotonin receptor <>[JBC267(11),7553-7562'92]
-MDVLSPGQ-----------------GNNTTSPPAPFETGG------------------NT
-TGISDVTV------------------------------------------SYQVITSLLL
-GTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQVL-NK
-WT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAALISL
-TWLIGFLI-SIPPMLG-WRTPEDRSDPDA---CTISKDH----------GYTIYSTFGAF
-YIPLLLMLVLYGRIFRAARFRIRK------------------------------------
----TVKKVEKTGADTRHGASPAPQPKKS-----------VNGESGSR---------NWRL
-GVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAG--PTPCAPASFER
-KNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-CESSCH-MPTLL
-GAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKI----I-----KCKFCRQ----------
-------------------------------------------------------------
-----------------------------------------------
->    33=p A35181 serotonin receptor class 1A - rat
-MDVFSFGQ-----------------GNNTTASQEPFGTGG------------------NV
-TSISDVTF------------------------------------------SYQVITSLLL
-GTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQVL-NK
-WT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAALISL
-TWLIGFLI-SIPPMLG-WRTPEDRSDPDA---CTISKDH----------GYTIYSTFGAF
-YIPLLLMLVLYGRIFRAARFRIRK------------------------------------
----TVRKVEKKGAGTSLGTSSAPPPKKS-----------LNGQPGSG---------DWRR
-CAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESG--SNSYAPACLER
-KNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-CESSCH-MPALL
-GAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKI----I-----KCKFCRR----------
-------------------------------------------------------------
-----------------------------------------------
->    34== L06803   1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93]
-MANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTG------------------LV
-TSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVYSHEHLVLTSVIL
-GLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEIS-KV
-WF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRILLMIMV
-VWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIFSTVGAF
-YLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTEYSVVSDCNGCNS
-PDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS----------SERL
-KQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS-------------
-RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-VDPE-G-IPPFA
-RSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKI----LFG---KYRRGHR----------
-------------------------------------------------------------
-----------------------------------------------
->    35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail
-MANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTG------------------LV
-TSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVYSHEHLVLTSVIL
-GLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEIS-KV
-WF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRILLMIMV
-VWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIFSTVGAF
-YLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTEYSVVSDCNGCNS
-PDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS----------SERL
-KQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS-------------
-RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-VDPE-G-IPPFA
-RSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKI----LFG---KYRRGHR----------
-------------------------------------------------------------
-----------------------------------------------
->    36== X95604   1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi
-MEGAE-GQEELDWEAL--YLRLP--LQNCSWNSTGWEPNW------------------NV
-TVVPNTTW---------WQASAPFDTPAALVRAAAK--------------------AVVL
-GLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-MPLGAVYEVV-QR
-WT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-IDYIHASTAKRVGMMIAC
-VWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQDV----------GYQIFATASSF
-YVPVLIILILYWRIYQTARKRIR-------------------------------------
---------RRRGATARGGVGPPP---------VPAGGALVAGGGSGGIAAAVVAVIGRPL
-PTISETTTTGFTNVSS----NNTS---PEKQSCANGLEADPPTTGYGAVAAAYYPSLVRR
-KPKEAADSK------RERKAAKTLAIITGAFVACWLPFFVLAILVPT-CDCE---VSPVL
-TSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRL----LCGRRVRRRRAPQ----------
-------------------------------------------------------------
-----------------------------------------------