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Removing old version of mafft to replace with the new
[jabaws.git] / binaries / src / mafft / test / sample.fftnsi
diff --git a/binaries/src/mafft/test/sample.fftnsi b/binaries/src/mafft/test/sample.fftnsi
deleted file mode 100644 (file)
index a97ff69..0000000
--- a/binaries/src/mafft/test/sample.fftnsi
+++ /dev/null
@@ -1,468 +0,0 @@
->     1== M63632   1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91]
-M-------------------NGTEGDNFYVPFS---------------------------
-----------NKTGLARSPY----------------------EYPQY-YLAEPWK-----
-----YSA----LAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVL
-FG-FTVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMG
-N-FRFGNTHAIMGVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDYYTLNP
-NFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTV--------------------------
-------------------------------------------------------------
----------------------------KEAAAAQQ----------ESASTQKA-------
---------------------EKEVTRMVVLMVIGFLVCWVPYASVAFYIFT---HQGSD-
-FGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITT----LCCGKNPLGDDE--SGAS
-TSKTEVSS----------------------------------------------------
---------------------------------------VSTSPVSPA
->     2== U22180   1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94]
-M-------------------NGTEGPNFYVPFS---------------------------
-----------NITGVVRSPF----------------------EQPQY-YLAEPWQ-----
-----FSM----LAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVF
-GG-FTTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMS
-N-FRFGENHAIMGVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDYYTLKP
-EVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTV--------------------------
-------------------------------------------------------------
----------------------------KEAAAQQQ----------ESATTQKA-------
---------------------EKEVTRMVIIMVIFFLICWLPYASVAMYIFT---HQGSN-
-FGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTS----LCCGKNPLGDDE--ASAT
-ASKTETSQ----------------------------------------------------
--------------------------------------------VAPA
->     3== M92038   1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9
-M-------------------NGTEGINFYVPMS---------------------------
-----------NKTGVVRSPF----------------------EYPQY-YLAEPWK-----
-----YRL----VCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMAC
-FG-FTVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMG
-N-FRFSATHAMMGIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDYYTHNP
-DYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKV--------------------------
-------------------------------------------------------------
----------------------------REAAAQQQ----------ESATTQKA-------
---------------------EKEVTRMVILMVLGFMLAWTPYAVVAFWIFT---NKGAD-
-FTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITT----ICCGKNPFGDEDVSSTVS
-QSKTEVSS----------------------------------------------------
---------------------------------------VSSSQVSPA
->     4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish
-M-------------------NGTEGKNFYVPMS---------------------------
-----------NRTGLVRSPF----------------------EYPQY-YLAEPWQ-----
-----FKI----LALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVC
-FG-FTVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMG
-S-FKFSSSHAFAGIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDYYTLNP
-DYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTV--------------------------
-------------------------------------------------------------
----------------------------KAAAAQQQ----------DSASTQKA-------
---------------------EREVTKMVILMVFGFLIAWTPYATVAAWIFF---NKGAD-
-FSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTT----IFCGKNPLGDDE-SSTVS
-TSKTEVSS----------------------------------------------------
--------------------------------------------VSPA
->     5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish
-M-------------------NGTEGNNFYVPLS---------------------------
-----------NRTGLVRSPF----------------------EYPQY-YLAEPWQ-----
-----FKL----LAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVC
-FG-FTVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMG
-S-FKFSSTHASAGIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDYYTLNP
-EYNNESYVLYMFICHFILPVTIIFFTYGRLVCTV--------------------------
-------------------------------------------------------------
----------------------------KAAAAQQQ----------DSASTQKA-------
---------------------EREVTKMVILMVLGFLVAWTPYATVAAWIFF---NKGAA-
-FSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTT----LFCGKNPLGDEE-SSTVS
-TSKTEVSS----------------------------------------------------
--------------------------------------------VSPA
->     6== L11864   1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208-
-M-----------------KQVPEFHEDFYIPIPLD-------------------------
-----------INNLSAYSPF----------------------LVPQD-HLGNQGI-----
-----FMA----MSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAI
-FG-SPLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLG
-N-FTFKTPHAIAGCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDWYTTNN
-KYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITL--------------------------
-------------------------------------------------------------
----------------------------KLAAKAQA----------DSASTQKA-------
---------------------EREVTKMVVVMVLGFLVCWAPYASFSLWIVS---HRGEE-
-FDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMMK-----MVCGKNIEEDEASTSSQV
-TQVSSVAP----------------------------------------------------
----------------------------------------------EK
->     7== M13299   1 human BCP <>[Science232(4747),193-202'86]
-M-------------------RKMSEEEFYL------------------------------
-----------FKNISSVGPW----------------------DGPQY-HIAPVWA-----
-----FYL----QAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCI
-FSVFPVFVASCN--GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFG
-N-FRFSSKHALTVVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDWYTVGT
-KYRSESYTWFLFIFCFIVPLSLICFSYTQLLRAL--------------------------
-------------------------------------------------------------
----------------------------KAVAAQQQ----------ESATTQKA-------
---------------------EREVSRMVVVMVGSFCVCYVPYAAFAMYMVN---NRNHG-
-LDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMK-----MVCGKAMTDESDTCSSQK
-TEVSTVSS----------------------------------------------------
------------------------------------------TQVGPN
->     8=opsin, greensensitive  human (fragment) S07060
-------------------------------------------------------------
-------------------------------------------------------------
-------------------------------------------------------DLAETV
-IA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFG
-N-VRFDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSS
-YPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAI--------------------------
-------------------------------------------------------------
----------------------------RAVAKQQK----------ESESTQKA-------
---------------------EKEVTRMVVVMVLAFC------------------------
-------------------------------------------------------------
-------------------------------------------------------------
------------------------------------------------
->     9== K03494   1 human GCP <>[Science232(4747),193-202'86]
-MAQQWSLQRLAGRHPQDSYEDSTQSSIFTY------------------------------
-----------TNSNSTRGPF----------------------EGPNY-HIAPRWV-----
-----YHL----TSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETV
-IA-STISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFG
-N-VRFDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSS
-YPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAI--------------------------
-------------------------------------------------------------
----------------------------RAVAKQQK----------ESESTQKA-------
---------------------EKEVTRMVVVMVLAFCFCWGPYAFFACFAAA---NPGYP-
-FHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCILQL------FGKKVDDGSELSSASK
-TEVSSV------------------------------------------------------
------------------------------------------SSVSPA
->    10== Z68193   1 human Red Opsin <>[]
-MAQQWSLQRLAGRHPQDSYEDSTQSSIFTY------------------------------
-----------TNSNSTRGPF----------------------EGPNY-HIAPRWV-----
-----YHL----TSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETV
-IA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFG
-N-VRFDAKLAIVGIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSS
-YPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAI--------------------------
-------------------------------------------------------------
----------------------------RAVAKQQK----------ESESTQKA-------
---------------------EKEVTRMVVVMIFAYCVCWGPYTFFACFAAA---NPGYA-
-FHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCILQL------FGKKVDDGSELSSASK
-TEVSSV------------------------------------------------------
------------------------------------------SSVSPA
->    11== M92036   1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92]
-MTEAWNVAVFAARRSRDD-DDTTRGSVFTY------------------------------
-----------TNTNNTRGPF----------------------EGPNY-HIAPRWV-----
-----YNL----VSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETL
-VA-STISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFG
-N-IKFDSKLAIIGIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSV
-ELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAI--------------------------
-------------------------------------------------------------
----------------------------RAVAAQQK----------ESESTQKA-------
---------------------EREVSRMVVVMIVAFCICWGPYASFVSFAAA---NPGYA-
-FHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIMQL------FGKKVDDGSEASTTSR
-TEVSSVSN----------------------------------------------------
------------------------------------------SSVAPA
->    12== M62903   1 chicken visual pigment <>[BBRC173,1212-1217'90]
-MA-AWEAAFAARRRHEE--EDTTRDSVFTY------------------------------
-----------TNSNNTRGPF----------------------EGPNY-HIAPRWV-----
-----YNL----TSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETV
-IA-STISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCKPFG
-N-IKFDGKLAVAGILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSS
-DPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAI--------------------------
-------------------------------------------------------------
----------------------------RAVAAQQK----------ESESTQKA-------
---------------------EKEVSRMVVVMIVAYCFCWGPYTFFACFAAA---NPGYA-
-FHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCILQL------FGKKVDDGSEVST-SR
-TEVSSVSN----------------------------------------------------
------------------------------------------SSVSPA
->    13== S75720   1 chicken P-opsin <>[Science267(5203),1502-1506'95]
-M-------------------SSNSSQ----------------------------------
-----------APPNGTPGPF----------------------DGPQWPYQAPQST-----
-----YVG----VAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTL
-CG-SSVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLG
-D-FQFQRRHAVSGCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNWYTGGS
---NNNSYILSLFVTCFVLPLSLILFSYTNLLLTL--------------------------
-------------------------------------------------------------
----------------------------RAAAAQQK----------EADTTQRA-------
---------------------EREVTRMVIVMVMAFLLCWLPYSTFALVVAT---HKGII-
-IQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLLEM----LCCGYQPQRTGKASPGTP
-GPHADVTA----------------------------------------------------
-----------------------------------AGLRNKVMPAHPV
->    14== M17718   1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87]
-M-------------------ESGNVSSSLFGNVSTALRPEA----R-----------LSA
----E------TRLLGWNVPP----------------------EELR--HIPEHWLTYPEP
-PESMNYL----LGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMV
-K--TPIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPME
-G--KMTHGKAIAMIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDYLT--D
-NFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSH-----------------------
-------------------------------------------------------------
---------------------------EKALRDQAKKMNVESLRSNVDKNKETA-------
---------------------EIRIAKAAITICFLFFCSWTPYGVMSLIGAF---GDKTL-
-LTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPW-LALNEKAPES----SAVA
-STSTTQEP----------------------------------------------------
------------------------------------------QQTTAA
->    15== X65879   1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92
-M-------------------EYHNVS-SVLGNVSSVLRPDA----R-----------LSA
----E------SRLLGWNVPP----------------------DELR--HIPEHWLIYPEP
-PESMNYL----LGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMI
-K--TPIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPME
-G--KMTHGKAIAMIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDYLT--D
-NFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSH-----------------------
-------------------------------------------------------------
---------------------------EKALRDQAKKMNVDSLRSNVDKSKEAA-------
---------------------EIRIAKAAITICFLFFASWTPYGVMSLIGAF---GDKTL-
-LTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPW-LAISEKAPES----RAAI
-STSTTQEQ----------------------------------------------------
------------------------------------------QQTTAA
->    16== M17730   1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87]
-M-------------------E------PLCNASEPPLRPEA----R------------SS
-GNGD------LQFLGWNVPP----------------------DQIQ--YIPEHWLTQLEP
-PASMHYM----LGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCL
-K--APIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMN
-R--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--D
-NFDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSH-----------------------
-------------------------------------------------------------
---------------------------EKALREQAKKMNVESLRSNVDKSKETA-------
---------------------EIRIAKAAITICFLFFVSWTPYGVMSLIGAF---GDKSL-
-LTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPW-LGVNEKSGEI----SSAQ
-STTTQEQ-----------------------------------------------------
------------------------------------------QQTTAA
->    17== X65880   1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92
-M-------------------D------ALCNASEPPLRPEA----R-----------MSS
-GSDE------LQFLGWNVPP----------------------DQIQ--YIPEHWLTQLEP
-PASMHYM----LGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCL
-K--APIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMN
-R--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--D
-NFDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNH-----------------------
-------------------------------------------------------------
---------------------------EKALREQAKKMNVESLRSNVDKSKETA-------
---------------------EIRIAKAAITICFLFFVSWTPYGVMSLIGAF---GDKSL-
-LTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPW-LGVNEKSGEA----SSAQ
-STTTQEQT----------------------------------------------------
------------------------------------------QQTSAA
->    18== D50584   1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1
-M-------------------T-----------NATGPQMAYYGAAS-----------MDF
-GYPE------GVSIVDFVRP----------------------EIKP--YVHQHWYNYPPV
-NPMWHYL----LGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLT
-TN-VPFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFN
-G-PKLTTGKAVVFALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDYLT--Q
-DFNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAH-----------------------
-------------------------------------------------------------
---------------------------EAAMRAQAKKMNVSTLRS-NEADAQRA-------
---------------------EIRIAKTALVNVSLWFICWTPYALISLKGVM---GDTSG-
-ITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPW-FCVHETETKSNDDSQSNS
-TVAQDKA-----------------------------------------------------
------------------------------------------------
->    19== D50583   1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1
-M-------------------A-----------NVTGPQMAFYGSGA-----------ATF
-GYPE------GMTVADFVPD----------------------RVKH--MVLDHWYNYPPV
-NPMWHYL----LGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLT
-TN-FPPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFN
-G-PKLTQGKATFMCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDYFT--R
-DMNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAH-----------------------
-------------------------------------------------------------
---------------------------EAAMRAQAKKMNVTNLRS-NEAETQRA-------
---------------------EIRIAKTALVNVSLWFICWTPYAAITIQGLL---GNAEG-
-ITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPW-FCVHEKDPNDVEENQSSN
-TQTQEKS-----------------------------------------------------
------------------------------------------------
->    20== K02320   1 D.melanogaster opsin <>[Cell40,851-858'85]
-M-------------------E-----SFAVAAAQLGPHFA-----P-----------LS-
-----------NGSVVDKVTP----------------------DMAH--LISPYWNQFPAM
-DPIWAKI----LTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMI
-TN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMA
-G-RPMTIPLALGKM---------------------------YVPEGNLTSCGIDYLE--R
-DWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAH-----------------------
-------------------------------------------------------------
---------------------------EKAMREQAKKMNVKSLRS-SEDAEKSA-------
---------------------EGKLAKVALVTITLWFMAWTPYLVINCMGLF---KF-EG-
-LTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPC-CVFGKVDDGK-SSDAQSQ
-ATASEAE-----------------------------------------------------
---------------------------------------------SKA
->    21== K02315   1 D.melanogaster ninaE <>[Cell40,839-850'85]
-M-------------------E-----SFAVAAAQLGPHFA-----P-----------LS-
-----------NGSVVDKVTP----------------------DMAH--LISPYWNQFPAM
-DPIWAKI----LTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMI
-TN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMA
-G-RPMTIPLALGKIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDYLE--R
-DWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAH-----------------------
-------------------------------------------------------------
---------------------------EKAMREQAKKMNVKSLRS-SEDAEKSA-------
---------------------EGKLAKVALVTITLWFMAWTPYLVINCMGLF---KF-EG-
-LTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPC-CVFGKVDDGK-SSDAQSQ
-ATASEAE-----------------------------------------------------
---------------------------------------------SKA
->    22== X65877   1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204'
-M-------------------D-----SFAAVATQLGPQFA-----A-----------PS-
-----------NGSVVDKVTP----------------------DMAH--LISPYWDQFPAM
-DPIWAKI----LTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMI
-TN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMA
-G-RPMTIPLALGKIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDYLE--R
-DWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAH-----------------------
-------------------------------------------------------------
---------------------------EKAMREQAKKMNVKSLRS-SEDADKSA-------
---------------------EGKLAKVALVTISLWFMAWTPYLVINCMGLF---KF-EG-
-LTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPC-CVFGKVDDGK-SSEAQSQ
-ATTSEAE-----------------------------------------------------
---------------------------------------------SKA
->    23== M12896   1 D.melanogaster Rh2 <>[Cell44,705-710'86]
-M-------------------ERSHLPETPFDLAHSGPRFQ-----A-----------QSS
-G---------NGSVLDNVLP----------------------DMAH--LVNPYWSRFAPM
-DPMMSKI----LGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMA
-SQ-SPVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGIN
-G-TPMTIKTSIMKILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDYMT--R
-MWNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAH-----------------------
-------------------------------------------------------------
---------------------------EKAMREQAKKMNVKSLRS-SEDCDKSA-------
---------------------EGKLAKVALTTISLWFMAWTPYLVICYFGLF---KI-DG-
-LTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPM-CVFGNTDEPKPDAPASDT
-ETTSEAD-----------------------------------------------------
---------------------------------------------SKA
->    24== X65878   1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92
-M-------------------ERSLLPEPPLAMALLGPRFE-----A-----------QTG
-G---------NRSVLDNVLP----------------------DMAP--LVNPHWSRFAPM
-DPTMSKI----LGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMA
-SQ-SPVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGIN
-G-TPMTIKTSIMKIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDYMT--R
-QWNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAH-----------------------
-------------------------------------------------------------
---------------------------EKAMRDQAKKMNVKSLRS-SEDCDKSA-------
---------------------ENKLAKVALTTISLWFMAWTPYLIICYFGLF---KI-DG-
-LTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPM-CVCGTTDEPKPDAPPSDT
-ETTSEAE-----------------------------------------------------
---------------------------------------------SKD
->    25== U26026   1 Apis mellifera long-wavelength rhodopsin <>[]
-M-------------------I-----------AVSGPSYE-----A-----------FSY
-GGQARFN---NQTVVDKVPP----------------------DMLH--LIDANWYQYPPL
-NPMWHGI----LGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMF
-CM-SPPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLS
-G-KPLSINGALIRIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDYFN--R
-GLLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAH-----------------------
-------------------------------------------------------------
---------------------------EKNMREQAKKMNVASLRS-SENQNTSA-------
---------------------ECKLAKVALMTISLWFMAWTPYLVINFSGIF---NLVK--
-ISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPS-LACAAEPSSDAVSTTSGT
-TTVTDNEK----------------------------------------------------
---------------------------------------------SNA
->    26== L03781   1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93]
-M--------------------------------ANQLSYS-----S-----------LGW
-PYQP------NASVVDTMPK----------------------EMLY--MIHEHWYAFPPM
-NPLWYSI----LGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMA
-FM-MPTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMA
-A-APLTHKKATLLLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDYLT--K
-DWSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEH-----------------------
-------------------------------------------------------------
---------------------------EKQLREQAKKMNVASLRANADQQKQSA-------
---------------------ECRLAKVAMMTVGLWFMAWTPYLIISWAGVF---SSGTR-
-LTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPS-LACGSGESGS-DVKSEAS
-ATTTMEEK----------------------------------------------------
------------------------------------------PKIPEA
->    27== X07797   1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88]
-M-------------------VE-----------------------S-----------TTL
-VNQTWWY---NPTVD----------------------------------IHPHWAKFDPI
-PDAVYYS----VGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSA
-INGFPLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMA
-ASKKMSHRRAFLMIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDYLS--T
-DPSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNH-----------------------
-------------------------------------------------------------
---------------------------EKEMAAMAKRLNAKELR--KAQAGASA-------
---------------------EMKLAKISMVIITQFMLSWSPYAIIALLAQF---GPAEW-
-VTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQFDEKECEDANDAE
-EEVVASER--GGESRDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PPQGYPPQGAYP
-PPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAYQA
->    28== X70498   1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93]
-M-------------------GR-----------------------D-----------LR-
-DNETWWY---NPSIV----------------------------------VHPHWREFDQV
-PDAVYYS----LGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSL
-VNGFPLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMA
-ASKKMSHRRAFIMIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDYIS--R
-DSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNH-----------------------
-------------------------------------------------------------
---------------------------EKEMAAMAKRLNAKELR--KAQAGANA-------
---------------------EMRLAKISIVIVSQFLLSWSPYAVVALLAQF---GPLEW-
-VTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKETEDDKDAE
-TEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPPQGYPPQGY--
-PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQGVDNQAYQA
->    29== L21195   1 human serotonin 5-HT7 receptor protein <placenta and fetal bra
-MM-----------------DVNSSGRPDLYGHLRSFLLPEVGRGLPDLSPDGGADPVAGS
-WAPHLLS---EVTASPAPTW----------------------------DAPPDNASGCGE
-QINYGRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAV
-AV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLT
-YPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF-----
------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPGFPRVEPDSVIAL---
-------------------------------------------------------------
---------------------------NGIVKLQKEVEECANLSRLLKHERKNI-------
----------------SIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCSC-
-IPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSL----LQCQYRNINRKLSAAGMH
-EALKLAERPERPEFVLQNADYCRKKGHDS-------------------------------
------------------------------------------------
->    30== L15228   1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93]
-M-----------------------------------------------------------
---PHLLSGFLEVTASPAPTW----------------------------DAPPDNVSGCGE
-QINYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAV
-AV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLT
-YPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF-----
------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPGFPRVQPESVISL---
-------------------------------------------------------------
---------------------------NGVVKLQKEVEECANLSRLLKHERKNI-------
----------------SIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCSC-
-IPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSL----LQCQYRNINRKLSAAGMH
-EALKLAERPERSEFVLQNSDHCGKKGHDT-------------------------------
------------------------------------------------
->    31=p A47425 serotonin receptor 5HT-7 - rat
-M-----------------------------------------------------------
---PHLLSGFLEVTASPAPTW----------------------------DAPPDNVSGCGE
-QINYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAV
-AV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLT
-YPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF-----
------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPGFPRVQPESVISL---
-------------------------------------------------------------
---------------------------NGVVKLQKEVEECANLSRLLKHERKNI-------
----------------SIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCSC-
-IPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSL----LQCQYRNINRKLSAAGMH
-EALKLAERPERSEFVLQNSDHCGKKGHDT-------------------------------
------------------------------------------------
->    32== M83181   1 human serotonin receptor <>[JBC267(11),7553-7562'92]
-M-------------------DVLSPGQG--------------------------------
-----------NNTTSPPAPF----------------------------ETGGNTTGISDV
-TVSYQVI----TSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSV
-LV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPID
-YVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP---EDRSDPDACTISKDH-----
------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK--------------------
--------------------TVKKVEKTGADTRHGASPAPQPKKSV----------NGESG
-SRNWRLGVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAGPTPCAPA
-SFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF---CESSCH
-MPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKI----IKCKFCRQ----------
-------------------------------------------------------------
------------------------------------------------
->    33=p A35181 serotonin receptor class 1A - rat
-M-------------------DVFSFGQG--------------------------------
-----------NNTTASQEPF----------------------------GTGGNVTSISDV
-TFSYQVI----TSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSV
-LV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPID
-YVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP---EDRSDPDACTISKDH-----
------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK--------------------
--------------------TVRKVEKKGAGTSLGTSSAPPPKKSL----------NGQPG
-SGDWRRCAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESGSNSYAPA
-CLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF---CESSCH
-MPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKI----IKCKFCRR----------
-------------------------------------------------------------
------------------------------------------------
->    34== L06803   1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93]
-M-------------------ANFTFGDLALDVARMGGLASTPSGLR-----------STG
-LTTPGLSPTGLVTSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVY
-SHEHLVL----TSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAV
-LV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-ID
-YIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK-----
------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVAS
-PKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNS
-SSSERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS-------
-------RT----REKLELKRERKAARTLAIITGAFLICWLPFFIIALIGPF---VDPEG-
-IPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKI----LFGKYRRGHR--------
-------------------------------------------------------------
------------------------------------------------
->    35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail
-M-------------------ANFTFGDLALDVARMGGLASTPSGLR-----------STG
-LTTPGLSPTGLVTSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVY
-SHEHLVL----TSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAV
-LV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-ID
-YIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK-----
------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVAS
-PKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNS
-SSSERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS-------
-------RT----REKLELKRERKAARTLAIITGAFLICWLPFFIIALIGPF---VDPEG-
-IPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKI----LFGKYRRGHR--------
-------------------------------------------------------------
------------------------------------------------
->    36== X95604   1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi
-M-------------------EGAEGQEELDWEALYLRLPLQNCSWN-----------STG
-WEPNW-----NVTVVPNTTW---------------------------------WQASAPF
-DTPAALVRAAAKAVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVAC
-LV-MPLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-ID
-YIHASTAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQDV-----
------GYQIFATASSFYVPVLIILILYWRIYQTARKRIRR--------------------
--------------------------RRGATARGGVGPPPVPAGGALVA------GGGSGG
-IAAAVVAVIGRPLPTISETTTTGFTNVSSNNTSPEKQSCANGLEADPPTTGYGAVAAAYY
-PSLVRRKP----KEAADSKRERKAAKTLAIITGAFVACWLPFFVLAILVPT---CDCE--
-VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRL----LCGRRVRRRRAPQ-----
-------------------------------------------------------------
------------------------------------------------