new mafft v 6.857 with extensions
[jabaws.git] / binaries / src / mafft / test / sample.lins1
diff --git a/binaries/src/mafft/test/sample.lins1 b/binaries/src/mafft/test/sample.lins1
new file mode 100644 (file)
index 0000000..8860bcf
--- /dev/null
@@ -0,0 +1,468 @@
+>     1== M63632   1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91]
+MN--------------------GTE--GDNFYVPFSNKTG--LARSP-------------
+--------------------YEYPQY-YLAEPW---------KYSA-----LAAYMFFLI
+LVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-FTVTMYTSMN-GYFV--
+FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMGNF-RFGNTHAIMGVAFTWIM
+ALAC-AAPPLV-GWS-----RYIPEGMQCSCGPDYYTLNPNFNNESYVVYMFVVHFLVPF
+VIIFFCYGRLLCTVKEAAAAQQESA-----------------------------------
+------------------------------------------------------------
+----------------------------------------------STQKAEKEVTRMVV
+LMVIGFLVCWVPYASVAFYIFT--HQGSD-FGATFMTLPAFFAKSSALYNPVIYILMNKQ
+FRNCMITTL-----CCGKNPLGDDE-SG-ASTSKTEVS----------------------
+------------------------------------------------------------
+----------------SVS-TSPVSPA---
+>     2== U22180   1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94]
+MN--------------------GTE--GPNFYVPFSNITG--VVRSP-------------
+--------------------FEQPQY-YLAEPW---------QFSM-----LAAYMFLLI
+VLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-FTTTLYTSLH-GYFV--
+FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSNF-RFGENHAIMGVAFTWVM
+ALAC-AAPPLV-GWS-----RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPM
+IVIFFCYGQLVFTVKEAAAQQQESA-----------------------------------
+------------------------------------------------------------
+----------------------------------------------TTQKAEKEVTRMVI
+IMVIFFLICWLPYASVAMYIFT--HQGSN-FGPIFMTLPAFFAKTASIYNPIIYIMMNKQ
+FRNCMLTSL-----CCGKNPLGDDE-AS-ATASKTETS----------------------
+------------------------------------------------------------
+----------------QVA-PA--------
+>     3== M92038   1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9
+MN--------------------GTE--GINFYVPMSNKTG--VVRSP-------------
+--------------------FEYPQY-YLAEPW---------KYRL-----VCCYIFFLI
+STGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-FTVTFYTAWN-GYFV--
+FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMGNF-RFSATHAMMGIAFTWVM
+AFSC-AAPPLF-GWS-----RYMPEGMQCSCGPDYYTHNPDYHNESYVLYMFVIHFIIPV
+VVIFFSYGRLICKVREAAAQQQESA-----------------------------------
+------------------------------------------------------------
+----------------------------------------------TTQKAEKEVTRMVI
+LMVLGFMLAWTPYAVVAFWIFT--NKGAD-FTATLMAVPAFFSKSSSLYNPIIYVLMNKQ
+FRNCMITTI-----CCGKNPFGDEDVSSTVSQSKTEVS----------------------
+------------------------------------------------------------
+----------------SVS-SSQVSPA---
+>     4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish
+MN--------------------GTE--GKNFYVPMSNRTG--LVRSP-------------
+--------------------FEYPQY-YLAEPW---------QFKI-----LALYLFFLM
+SMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-FTVTFYTAIN-GYFV--
+LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGSF-KFSSSHAFAGIAFTWVM
+ALAC-AAPPLF-GWS-----RYIPEGMQCSCGPDYYTLNPDYNNESYVIYMFVCHFILPV
+AVIFFTYGRLVCTVKAAAAQQQDSA-----------------------------------
+------------------------------------------------------------
+----------------------------------------------STQKAEREVTKMVI
+LMVFGFLIAWTPYATVAAWIFF--NKGAD-FSAKFMAIPAFFSKSSALYNPVIYVLLNKQ
+FRNCMLTTI-----FCGKNPLGDDE-SSTVSTSKTEVS----------------------
+------------------------------------------------------------
+----------------SVS-PA--------
+>     5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish
+MN--------------------GTE--GNNFYVPLSNRTG--LVRSP-------------
+--------------------FEYPQY-YLAEPW---------QFKL-----LAVYMFFLI
+CLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-FTVTFYTAIN-GYFA--
+LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGSF-KFSSTHASAGIAFTWVM
+AMAC-AAPPLV-GWS-----RYIPEGIQCSCGPDYYTLNPEYNNESYVLYMFICHFILPV
+TIIFFTYGRLVCTVKAAAAQQQDSA-----------------------------------
+------------------------------------------------------------
+----------------------------------------------STQKAEREVTKMVI
+LMVLGFLVAWTPYATVAAWIFF--NKGAA-FSAQFMAIPAFFSKTSALYNPVIYVLLNKQ
+FRSCMLTTL-----FCGKNPLGDEE-SSTVSTSKTEVS----------------------
+------------------------------------------------------------
+----------------SVS-PA--------
+>     6== L11864   1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208-
+MK--------------------QVPEFHEDFYIPIPLDINNLSAYSP-------------
+--------------------FLVPQD-HLGNQG---------IFMA-----MSVFMFFIF
+IGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-SPLSFYSFFN-RYFI--
+FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLGNF-TFKTPHAIAGCILPWIS
+ALAA-SLPPLF-GWS-----RYIPEGLQCSCGPDWYTTNNKYNNESYVMFLFCFCFAVPF
+GTIVFCYGQLLITLKLAAKAQADSA-----------------------------------
+------------------------------------------------------------
+----------------------------------------------STQKAEREVTKMVV
+VMVLGFLVCWAPYASFSLWIVS--HRGEE-FDLRMATIPSCLSKASTVYNPVIYVLMNKQ
+FRSCMM-KM-----VCGKN-IEEDE-AS-TSSQVTQVS----------------------
+------------------------------------------------------------
+----------------SVA-PEK-------
+>     7== M13299   1 human BCP <>[Science232(4747),193-202'86]
+MR--------------------KMS--EEEFYL-----FKNISSVGP-------------
+--------------------WDGPQY-HIAPVW---------AFYL-----QAAFMGTVF
+LIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS-VFPVFVASCN-GYFV--
+FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNF-RFSSKHALTVVLATWTI
+GIGV-SIPPFF-GWS-----RFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPL
+SLICFSYTQLLRALKAVAAQQQESA-----------------------------------
+------------------------------------------------------------
+----------------------------------------------TTQKAEREVSRMVV
+VMVGSFCVCYVPYAAFAMYMVN--NRNHG-LDLRLVTIPSFFSKSACIYNPIIYCFMNKQ
+FQACIM-KM-----VCGKA-MTDES-DT-CSSQKTEVS----------------------
+------------------------------------------------------------
+----------------TVS-STQVGPN---
+>     8=opsin, greensensitive  human (fragment) S07060
+------------------------------------------------------------
+------------------------------------------------------------
+----------------------------------DLAETVIA-STISIVNQVS-GYFV--
+LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGNV-RFDAKLAIVGIAFSWIW
+AAVW-TAPPIF-GWS-----RYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCITPL
+SIIVLCYLQVWLAIRAVAKQQKESE-----------------------------------
+------------------------------------------------------------
+----------------------------------------------STQKAEKEVTRMVV
+VMVLAFC-----------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------
+>     9== K03494   1 human GCP <>[Science232(4747),193-202'86]
+MAQQWS-LQRLAGRHPQDSYEDSTQ--SSIFTY-----TNSNSTRGP-------------
+--------------------FEGPNY-HIAPRW---------VYHL-----TSVWMIFVV
+IASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISVVNQVY-GYFV--
+LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGNV-RFDAKLAIVGIAFSWIW
+AAVW-TAPPIF-GWS-----RYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCITPL
+SIIVLCYLQVWLAIRAVAKQQKESE-----------------------------------
+------------------------------------------------------------
+----------------------------------------------STQKAEKEVTRMVV
+VMVLAFCFCWGPYAFFACFAAA--NPGYP-FHPLMAALPAFFAKSATIYNPVIYVFMNRQ
+FRNCILQLF----------GKKVDDGSELSSASKTEVS----------------------
+------------------------------------------------------------
+----------------SV---SSVSPA---
+>    10== Z68193   1 human Red Opsin <>[]
+MAQQWS-LQRLAGRHPQDSYEDSTQ--SSIFTY-----TNSNSTRGP-------------
+--------------------FEGPNY-HIAPRW---------VYHL-----TSVWMIFVV
+TASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISIVNQVS-GYFV--
+LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGNV-RFDAKLAIVGIAFSWIW
+SAVW-TAPPIF-GWS-----RYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLMVTCCIIPL
+AIIMLCYLQVWLAIRAVAKQQKESE-----------------------------------
+------------------------------------------------------------
+----------------------------------------------STQKAEKEVTRMVV
+VMIFAYCVCWGPYTFFACFAAA--NPGYA-FHPLMAALPAYFAKSATIYNPVIYVFMNRQ
+FRNCILQLF----------GKKVDDGSELSSASKTEVS----------------------
+------------------------------------------------------------
+----------------SV---SSVSPA---
+>    11== M92036   1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92]
+MTEAWNVAVFAARRSRDD--DDTTR--GSVFTY-----TNTNNTRGP-------------
+--------------------FEGPNY-HIAPRW---------VYNL-----VSFFMIIVV
+IASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-STISVFNQIF-GYFI--
+LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFGNI-KFDSKLAIIGIVFSWVW
+AWGW-SAPPIF-GWS-----RYWPHGLKTSCGPDVFSGSVELGCQSFMLTLMITCCFLPL
+FIIIVCYLQVWMAIRAVAAQQKESE-----------------------------------
+------------------------------------------------------------
+----------------------------------------------STQKAEREVSRMVV
+VMIVAFCICWGPYASFVSFAAA--NPGYA-FHPLAAALPAYFAKSATIYNPVIYVFMNRQ
+FRNCIMQLF----------GKKVDDGSEASTTSRTEVS----------------------
+------------------------------------------------------------
+----------------SVS-NSSVAPA---
+>    12== M62903   1 chicken visual pigment <>[BBRC173,1212-1217'90]
+MA-AWE-AAFAARRRHEE--EDTTR--DSVFTY-----TNSNNTRGP-------------
+--------------------FEGPNY-HIAPRW---------VYNL-----TSVWMIFVV
+AASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-STISVINQIS-GYFI--
+LGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCKPFGNI-KFDGKLAVAGILFSWLW
+SCAW-TAPPIF-GWS-----RYWPHGLKTSCGPDVFSGSSDPGVQSYMVVLMVTCCFFPL
+AIIILCYLQVWLAIRAVAAQQKESE-----------------------------------
+------------------------------------------------------------
+----------------------------------------------STQKAEKEVSRMVV
+VMIVAYCFCWGPYTFFACFAAA--NPGYA-FHPLAAALPAYFAKSATIYNPIIYVFMNRQ
+FRNCILQLF----------GKKVDDGSEVST-SRTEVS----------------------
+------------------------------------------------------------
+----------------SVS-NSSVSPA---
+>    13== S75720   1 chicken P-opsin <>[Science267(5203),1502-1506'95]
+MS--------------------------SNSSQ-----APPNGTPGP-------------
+--------------------FDGPQWPYQAPQS---------TYVG-----VAVLMGTVV
+ACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-SSVSLSNNIN-GFFV--
+FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLGDF-QFQRRHAVSGCAFTWGW
+ALLW-SAPPLL-GWS-----SYVPEGLRTSCGPNWYTGGSN--NNSYILSLFVTCFVLPL
+SLILFSYTNLLLTLRAAAAQQKEAD-----------------------------------
+------------------------------------------------------------
+----------------------------------------------TTQRAEREVTRMVI
+VMVMAFLLCWLPYSTFALVVAT--HKGII-IQPVLASLPSYFSKTATVYNPIIYVFMNKQ
+FQSCLLEML-----CCGYQPQRTGKASPGTPGPHADVT----------------------
+------------------------------------------------------------
+----------------AAGLRNKVMPAHPV
+>    14== M17718   1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87]
+MESGNVSSSLFGNVSTALRPE----ARLSA---E---TRLLGWNVPP-------------
+--------------------EELR---HIPEHWLTYPEPPESMNYL-----LGTLYIFFT
+LMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK--TPIFIYNSFH-QGYA--
+LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEG--KMTHGKAIAMIIFIYMY
+ATPW-VVACYTETWG-----RFVPEGYLTSCTFDYLTDN--FDTRLFVACIFFFSFVCPT
+TMITYYYSQIVGHVFSHEKALRDQAKKMNVESLR--------------------------
+------------------------------------------------------------
+-----------------------------------------SNVDKNKETAEIRIAKAAI
+TICFLFFCSWTPYGVMSLIGAF--GDKTL-LTPGATMIPACACKMVACIDPFVYAISHPR
+YRMELQKRCPWL--ALNEKAPESSAVASTST-TQEPQQT---------------------
+------------------------------------------------------------
+----------------TAA-----------
+>    15== X65879   1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92
+MEYHNVSSVL-GNVSSVLRPD----ARLSA---E---SRLLGWNVPP-------------
+--------------------DELR---HIPEHWLIYPEPPESMNYL-----LGTLYIFFT
+VISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK--TPIFIYNSFH-QGYA--
+LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPMEG--KMTHGKAIAMIIFIYLY
+ATPW-VVACYTESWG-----RFVPEGYLTSCTFDYLTDN--FDTRLFVACIFFFSFVCPT
+TMITYYYSQIVGHVFSHEKALRDQAKKMNVDSLR--------------------------
+------------------------------------------------------------
+-----------------------------------------SNVDKSKEAAEIRIAKAAI
+TICFLFFASWTPYGVMSLIGAF--GDKTL-LTPGATMIPACTCKMVACIDPFVYAISHPR
+YRMELQKRCPWL--AISEKAPESRAAISTST-TQEQQQT---------------------
+------------------------------------------------------------
+----------------TAA-----------
+>    16== M17730   1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87]
+ME------PLCNASEPPLRPE----AR-SSGNGD---LQFLGWNVPP-------------
+--------------------DQIQ---YIPEHWLTQLEPPASMHYM-----LGVFYIFLF
+CASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIF--NSFH-RGFAIY
+LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKAVIMNIIIWLY
+CTPW-VVLPLTQFWD-----RFVPEGYLTSCSFDYLSDN--FDTRLFVGTIFFFSFVCPT
+LMILYYYSQIVGHVFSHEKALREQAKKMNVESLR--------------------------
+------------------------------------------------------------
+-----------------------------------------SNVDKSKETAEIRIAKAAI
+TICFLFFVSWTPYGVMSLIGAF--GDKSL-LTQGATMIPACTCKLVACIDPFVYAISHPR
+YRLELQKRCPWL--GVNEKSGEISSAQSTTT-QEQQQTT---------------------
+------------------------------------------------------------
+----------------AA------------
+>    17== X65880   1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92
+MD------ALCNASEPPLRPE----ARMSSGSDE---LQFLGWNVPP-------------
+--------------------DQIQ---YIPEHWLTQLEPPASMHYM-----LGVFYIFLF
+FASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIFIYNSFH-RGFA--
+LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKAVIMNIIIWLY
+CTPW-VVLPLTQFWD-----RFVPEGYLTSCSFDYLSDN--FDTRLFVGTIFLFSFVVPT
+LMILYYYSQIVGHVFNHEKALREQAKKMNVESLR--------------------------
+------------------------------------------------------------
+-----------------------------------------SNVDKSKETAEIRIAKAAI
+TICFLFFVSWTPYGVMSLIGAF--GDKSL-LTPGATMIPACTCKLVACIEPFVYAISHPR
+YRMELQKRCPWL--GVNEKSGEASSAQSTTT-QEQTQQT---------------------
+------------------------------------------------------------
+----------------SAA-----------
+>    18== D50584   1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1
+M-----------TNATGPQMAYYGAASMDFGYPE---GVSIVDFVRP-------------
+--------------------EIKP---YVHQHWYNYPPVNPMWHYL-----LGVIYLFLG
+TVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-VPFFTYNCFSGGVWM--
+FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFNGP-KLTTGKAVVFALISWVI
+AIGC-ALPPFF-GWG-----NYILEGILDSCSYDYLTQD--FNTFSYNIFIFVFDYFLPA
+AIIVFSYVFIVKAIFAHEAAMRAQAKKMNVSTLR--------------------------
+------------------------------------------------------------
+-----------------------------------------S-NEADAQRAEIRIAKTAL
+VNVSLWFICWTPYALISLKGVM--GDTSG-ITPLVSTLPALLAKSCSCYNPFVYAISHPK
+YRLAITQHLPWF--CVHETETKSNDDSQSNS-TVAQDK----------------------
+------------------------------------------------------------
+------------------A-----------
+>    19== D50583   1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1
+M-----------ANVTGPQMAFYGSGAATFGYPE---GMTVADFVPD-------------
+--------------------RVKH---MVLDHWYNYPPVNPMWHYL-----LGVVYLFLG
+VISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-FPPFCYNCFSGGRWM--
+FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFNGP-KLTQGKATFMCGLAWVI
+SVGW-SLPPFF-GWG-----SYTLEGILDSCSYDYFTRD--MNTITYNICIFIFDFFLPA
+SVIVFSYVFIVKAIFAHEAAMRAQAKKMNVTNLR--------------------------
+------------------------------------------------------------
+-----------------------------------------S-NEAETQRAEIRIAKTAL
+VNVSLWFICWTPYAAITIQGLL--GNAEG-ITPLLTTLPALLAKSCSCYNPFVYAISHPK
+FRLAITQHLPWF--CVHEKDPNDVEENQSSN-TQTQEK----------------------
+------------------------------------------------------------
+------------------S-----------
+>    20== K02320   1 D.melanogaster opsin <>[Cell40,851-858'85]
+ME-----SFAVAAAQLGPHFA-----PLS--------NGSVVDKVTP-------------
+--------------------DMAH---LISPYWNQFPAMDPIWAKI-----LTAYMIMIG
+MISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLYF-ETWV--
+LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAGR-PMTIPLALGKM------
+---------------------YVPEGNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPL
+FLICYSYWFIIAAVSAHEKAMREQAKKMNVKSLR--------------------------
+------------------------------------------------------------
+-----------------------------------------S-SEDAEKSAEGKLAKVAL
+VTITLWFMAWTPYLVINCMGLF--KF-EG-LTPLNTIWGACFAKSAACYNPIVYGISHPK
+YRLALKEKCPCC--VFGKVDDGKSSDAQSQA-TASEAE----------------------
+------------------------------------------------------------
+----------------SKA-----------
+>    21== K02315   1 D.melanogaster ninaE <>[Cell40,839-850'85]
+ME-----SFAVAAAQLGPHFA-----PLS--------NGSVVDKVTP-------------
+--------------------DMAH---LISPYWNQFPAMDPIWAKI-----LTAYMIMIG
+MISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLYF-ETWV--
+LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAGR-PMTIPLALGKIAYIWFM
+SSIW-CLAPAF-GWS-----RYVPEGNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPL
+FLICYSYWFIIAAVSAHEKAMREQAKKMNVKSLR--------------------------
+------------------------------------------------------------
+-----------------------------------------S-SEDAEKSAEGKLAKVAL
+VTITLWFMAWTPYLVINCMGLF--KF-EG-LTPLNTIWGACFAKSAACYNPIVYGISHPK
+YRLALKEKCPCC--VFGKVDDGKSSDAQSQA-TASEAE----------------------
+------------------------------------------------------------
+----------------SKA-----------
+>    22== X65877   1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204'
+MD-----SFAAVATQLGPQFA-----APS--------NGSVVDKVTP-------------
+--------------------DMAH---LISPYWDQFPAMDPIWAKI-----LTAYMIIIG
+MISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLYF-ETWV--
+LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAGR-PMTIPLALGKIAYIWFM
+STIWCCLAPVF-GWS-----RYVPEGNLTSCGIDYLERD--WNPRSYLIFYSIFVYYIPL
+FLICYSYWFIIAAVSAHEKAMREQAKKMNVKSLR--------------------------
+------------------------------------------------------------
+-----------------------------------------S-SEDADKSAEGKLAKVAL
+VTISLWFMAWTPYLVINCMGLF--KF-EG-LTPLNTIWGACFAKSAACYNPIVYGISHPK
+YRLALKEKCPCC--VFGKVDDGKSSEAQSQA-TTSEAE----------------------
+------------------------------------------------------------
+----------------SKA-----------
+>    23== M12896   1 D.melanogaster Rh2 <>[Cell44,705-710'86]
+MERSHLPETPFDLAHSGPRFQ-----AQSSG------NGSVLDNVLP-------------
+--------------------DMAH---LVNPYWSRFAPMDPMMSKI-----LGLFTLAIM
+IISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFYY-ETWV--
+LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGINGT-PMTIKTSIMKILFIWMM
+AVFW-TVMPLI-GWS-----AYVPEGNLTACSIDYMTRM--WNPRSYLITYSLFVYYTPL
+FLICYSYWFIIAAVAAHEKAMREQAKKMNVKSLR--------------------------
+------------------------------------------------------------
+-----------------------------------------S-SEDCDKSAEGKLAKVAL
+TTISLWFMAWTPYLVICYFGLF--KI-DG-LTPLTTIWGATFAKTSAVYNPIVYGISHPK
+YRIVLKEKCPMC--VFGNTDEPKPDAPASDTETTSEAD----------------------
+------------------------------------------------------------
+----------------SKA-----------
+>    24== X65878   1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92
+MERSLLPEPPLAMALLGPRFE-----AQTGG------NRSVLDNVLP-------------
+--------------------DMAP---LVNPHWSRFAPMDPTMSKI-----LGLFTLVIL
+IISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFYY-ETWV--
+LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGINGT-PMTIKTSIMKIAFIWMM
+AVFW-TIMPLI-GWS-----SYVPEGNLTACSIDYMTRQ--WNPRSYLITYSLFVYYTPL
+FMICYSYWFIIATVAAHEKAMRDQAKKMNVKSLR--------------------------
+------------------------------------------------------------
+-----------------------------------------S-SEDCDKSAENKLAKVAL
+TTISLWFMAWTPYLIICYFGLF--KI-DG-LTPLTTIWGATFAKTSAVYNPIVYGISHPN
+DRLVLKEKCPMC--VCGTTDEPKPDAPPSDTETTSEAE----------------------
+------------------------------------------------------------
+----------------SKD-----------
+>    25== U26026   1 Apis mellifera long-wavelength rhodopsin <>[]
+M-----------IAVSGPSYE-----AFSYGGQARFNNQTVVDKVPP-------------
+--------------------DMLH---LIDANWYQYPPLNPMWHGI-----LGFVIGMLG
+FVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-SPPMVINCYY-ETWV--
+LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSGK-PLSINGALIRIIAIWLF
+SLGW-TIAPMF-GWN-----RYVPEGNMTACGTDYFNRG--LLSASYLVCYGIWVYFVPL
+FLIIYSYWFIIQAVAAHEKNMREQAKKMNVASLR--------------------------
+------------------------------------------------------------
+-----------------------------------------S-SENQNTSAECKLAKVAL
+MTISLWFMAWTPYLVINFSGIF--NL-VK-ISPLFTIWGSLFAKANAVYNPIVYGISHPK
+YRAALFAKFPSL--AC-AAEPSSDAVSTTSG-TTTVTDN---------------------
+------------------------------------------------------------
+-------------EK-SNA-----------
+>    26== L03781   1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93]
+M-------------ANQLSYS-----SLGWPYQP---NASVVDTMPK-------------
+--------------------EMLY---MIHEHWYAFPPMNPLWYSI-----LGVAMIILG
+IICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-MPTMTSNCFA-ETWI--
+LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMAAA-PLTHKKATLLLLFVWIW
+SGGW-TILPFF-GWS-----RYVPEGNLTSCTVDYLTKD--WSSASYVVIYGLAVYFLPL
+ITMIYCYFFIVHAVAEHEKQLREQAKKMNVASLR--------------------------
+------------------------------------------------------------
+-----------------------------------------ANADQQKQSAECRLAKVAM
+MTVGLWFMAWTPYLIISWAGVF--SSGTR-LTPLATIWGSVFAKANSCYNPIVYGISHPR
+YKAALYQRFPSL--ACGSGESGSDVKSEASA-TTTMEEK---------------------
+------------------------------------------------------------
+-------------PKIPEA-----------
+>    27== X07797   1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88]
+M-------------VESTTLV-----NQTWWY-----NPTV-------------------
+---------------------------DIHPHWAKFDPIPDAVYYS-----VGIFIGVVG
+IIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGFPLKTISAFM-KKWI--
+FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMAASKKMSHRRAFLMIIFVWMW
+SIVW-SVGPVF-NWG-----AYVPEGILTSCSFDYLSTD--PSTRSFILCMYFCGFMLPI
+IIIAFCYFNIVMSVSNHEKEMAAMAKRLNAKELR--------------------------
+------------------------------------------------------------
+-----------------------------------------K-AQ-AGASAEMKLAKISM
+VIITQFMLSWSPYAIIALLAQF--GPAEW-VTPYAAELPVLFAKASAIHNPIVYSVSHPK
+FREAIQTTFPWLLTCCQFDEKECEDANDAEE-EVVASER--GGESRDAAQMKEMMAMMQK
+MQAQQAAYQP---PPPPQGYPPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQ
+VEAPQGAPPQGVDNQAYQA-----------
+>    28== X70498   1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93]
+M-------------GRDLR-D-----NETWWY-----NPSI-------------------
+---------------------------VVHPHWREFDQVPDAVYYS-----LGIFIGICG
+IIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFL-KKWI--
+FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLW
+SVLW-AIGPIF-GWG-----AYTLEGVLCNCSFDYISRD--STTRSNILCMFILGFFGPI
+LIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELR--------------------------
+------------------------------------------------------------
+-----------------------------------------K-AQ-AGANAEMRLAKISI
+VIVSQFLLSWSPYAVVALLAQF--GPLEW-VTPYAAQLPVMFAKASAIHNPMIYSVSHPK
+FREAISQTFPWVLTCCQFDDKETEDDKDAET-EIPAGESSDAAPSADAAQMKEMMAMMQK
+MQQQQAAYPPQGYAPPPQGYPPQGYPPQGY--PPQGYPPQGYPP---PPQGAPPQGAPP-
+-----AAPPQGVDNQAYQA-----------
+>    29== L21195   1 human serotonin 5-HT7 receptor protein <placenta and fetal bra
+MMDVNSSGRPDLYGHLRSFLLPEVGRGLPDLSPDG----GADPVAGSWAPHLLS---EVT
+ASPAPTWDAPPDNA------SGCGE----------QINYGRVEKVV-----IGSILTLIT
+LLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--
+FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLL
+SASI-TLPPLF-GWA-----QNVNDDKVCLISQDF----------GYTIYSTAVAFYIPM
+SVMLFMYYQIYKAARKSAAKHKF--------------PGFPRVEPDSVIALNG-------
+---------------------------------------------IVKLQKE--------
+----------VEECAN------------------LSRLLKHERKNISIFKREQKAATTLG
+IIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRD
+LRTTYRSLL-----QCQYRNINRKLSAAGMHEALKLAERPERPEFVLQNADYCRKKGHDS
+------------------------------------------------------------
+------------------------------
+>    30== L15228   1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93]
+M------------------------------------------------PHLLSGFLEVT
+ASPAPTWDAPPDNV------SGCGE----------QINYGRVEKVV-----IGSILTLIT
+LLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--
+FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLL
+SASI-TLPPLF-GWA-----QNVNDDKVCLISQDF----------GYTIYSTAVAFYIPM
+SVMLFMYYQIYKAARKSAAKHKF--------------PGFPRVQPESVISLNG-------
+---------------------------------------------VVKLQKE--------
+----------VEECAN------------------LSRLLKHERKNISIFKREQKAATTLG
+IIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRD
+LRPTSRSLL-----QCQYRNINRKLSAAGMHEALKLAERPERSEFVLQNSDHCGKKGHDT
+------------------------------------------------------------
+------------------------------
+>    31=p A47425 serotonin receptor 5HT-7 - rat
+M------------------------------------------------PHLLSGFLEVT
+ASPAPTWDAPPDNV------SGCGE----------QINYGRVEKVV-----IGSILTLIT
+LLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDLIGGKWI--
+FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAKMILSVWLL
+SASI-TLPPLF-GWA-----QNVNDDKVCLISQDF----------GYTIYSTAVAFYIPM
+SVMLFMYYQIYKAARKSAAKHKF--------------PGFPRVQPESVISLNG-------
+---------------------------------------------VVKLQKE--------
+----------VEECAN------------------LSRLLKHERKNISIFKREQKAATTLG
+IIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRD
+LRTTYRSLL-----QCQYRNINRKLSAAGMHEALKLAERPERSEFVLQNSDHCGKKGHDT
+------------------------------------------------------------
+------------------------------
+>    32== M83181   1 human serotonin receptor <>[JBC267(11),7553-7562'92]
+MDVLSPG-----------------------------------------------------
+---------QGNNT------TSPPAPFETGGNTTGISDVTVSYQVI-----TSLLLGTLI
+FCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQVL-NKWT--
+LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAALISLTWLI
+GFLI-SIPPML-GWRTPEDRSDPD---ACTISKDH----------GYTIYSTFGAFYIPL
+LLMLVLYGRIFRAARFRIRKTVKKVEKTGADTRHGASPAPQPKK-----SVNG--ESGSR
+NWRLGVESKAGGALCANGAVRQGDDGAAL--EVIEVHRVGNSKEHLPLPSEAGPTPCAPA
+S------------------FERKNERNA-------------EAKRKMALARERKTVKTLG
+IIMGTFILCWLPFFIVALVLPF-CESSCH-MPTLLGAIINWLGYSNSLLNPVIYAYFNKD
+FQNAFKKII-----KCKFCR--Q-------------------------------------
+------------------------------------------------------------
+------------------------------
+>    33=p A35181 serotonin receptor class 1A - rat
+MDVFSFG-----------------------------------------------------
+---------QGNNT------TASQEPFGTGGNVTSISDVTFSYQVI-----TSLLLGTLI
+FCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQVL-NKWT--
+LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAALISLTWLI
+GFLI-SIPPML-GWRTPEDRSDPD---ACTISKDH----------GYTIYSTFGAFYIPL
+LLMLVLYGRIFRAARFRIRKTVRKVEKKGAGTSLGTSSAPPPKK-----SLNG--QPGSG
+DWRRCAENRAVGTPCTNGAVRQGDDEATL--EVIEVHRVGNSKEHLPLPSESGSNSYAPA
+C------------------LERKNERNA-------------EAKRKMALARERKTVKTLG
+IIMGTFILCWLPFFIVALVLPF-CESSCH-MPALLGAIINWLGYSNSLLNPVIYAYFNKD
+FQNAFKKII-----KCKFCR--R-------------------------------------
+------------------------------------------------------------
+------------------------------
+>    34== L06803   1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93]
+MANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTGLVTSDFNDSYGLTGQFINGS
+HSSRSRDNASANDT------SATNM---TDDRYWSLTVYSHEHLVL-----TSVILGLFV
+LCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEIS-KVWF--
+LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRILLMIMVVWIV
+ALFI-SIPPLF-GWRDPNN--DPDKTGTCIISQDK----------GYTIFSTVGAFYLPM
+LVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTEYSVVSDCNGCNSPDST
+TEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSSSERLKQIQIETAEAFANG
+CAEEASIAMLERQCNNGKKISSNDTPYS-------------RTREKLELKRERKAARTLA
+IITGAFLICWLPFFIIALIGPF-VDPE-G-IPPFARSFVLWLGYFNSLLNPIIYTIFSPE
+FRSAFQKIL-----FGKYRRGHR-------------------------------------
+------------------------------------------------------------
+------------------------------
+>    35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail
+MANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTGLVTSDFNDSYGLTGQFINGS
+HSSRSRDNASANDT------SATNM---TDDRYWSLTVYSHEHLVL-----TSVILGLFV
+LCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEIS-KVWF--
+LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRILLMIMVVWIV
+ALFI-SIPPLF-GWRDPNN--DPDKTGTCIISQDK----------GYTIFSTVGAFYLPM
+LVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTEYSVVSDCNGCNSPDST
+TEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSSSERLKQIQIETAEAFANG
+CAEEASIAMLERQCNNGKKISSNDTPYS-------------RTREKLELKRERKAARTLA
+IITGAFLICWLPFFIIALIGPF-VDPE-G-IPPFARSFVLWLGYFNSLLNPIIYTIFSPE
+FRSAFQKIL-----FGKYRRGHR-------------------------------------
+------------------------------------------------------------
+------------------------------
+>    36== X95604   1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi
+MEG-AEGQEELDWEAL--------------------------------------------
+YLRLPLQNCSWNSTGWEPNWNVTVV---PNTTWWQASAPFDTPAALVRAAAKAVVLGLLI
+LATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-MPLGAVYEVV-QRWT--
+LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-IDYIHASTAKRVGMMIACVWTV
+SFFV-CIAQLL-GWKDPDWNQRVSEDLRCVVSQDV----------GYQIFATASSFYVPV
+LIILILYWRIYQTARKRIRR------RRGATARGGVGPPPVPAG----------------
+-----------------GALVAGGGSGGIAAAVVAV-----IGRPLPTISETTTTGFTNV
+SSNNTSPE--KQSCANGLEADPPTTGYGAVAAAYYPSLVRRKPKEAADSKRERKAAKTLA
+IITGAFVACWLPFFVLAILVPT-CD--CE-VSPVLTSLSLWLGYFNSTLNPVIYTVFSPE
+FRHAFQRLL-----CGRRVRRRRA----------------------------------PQ
+------------------------------------------------------------
+------------------------------