JWS-113 Commented Jpred entries in various configuration files.

[jabaws.git] / binaries / src / setexecflag.sh

diff --git a/binaries/src/setexecflag.sh b/binaries/src/setexecflag.sh
index 33d1b65..7e300ed 100644 (file)
--- a/binaries/src/setexecflag.sh
+++ b/binaries/src/setexecflag.sh
@@ -1,11 +1,15 @@
-#!/bin/bash
+#!/bin/sh
 
 echo ""
 echo "Setting executable flag for Clustalw..."
 chmod +x clustalw/src/clustalw2 
 
+echo "Setting executable flag for Clustal Omega..."
+chmod +x clustalo/src/clustalo 
+
 echo "Setting executable flag for Mafft..."
 chmod +x mafft/binaries/* 
+chmod +x mafft/scripts/*
 
 echo "Setting executable flag for Mafft dependency fasta34 ..."
 chmod +x fasta34/fasta34 
@@ -23,4 +27,19 @@ echo "Setting executable flag for DisEMBL..."
 chmod +x disembl/disembl disembl/sav_gol disembl/DisEMBL.py 
 
 echo "Setting executable flag for GlobPlot..."
-chmod +x globplot/GlobPlot.py 
+chmod +x globplot/GlobPlot.py globplot/sav_gol
+
+echo "Setting executable flag for IUPred..."
+chmod +x iupred/iupred
+
+#echo "Setting executable flag for Jpred..."
+#chmod +x jpred/i686/* jpred/x86_64/*
+
+echo "Setting executable flag for ViennaRNA..."
+chmod +x ViennaRNA/Progs/RNAalifold
+
+echo "Setting executable flag for MSAProbs-0.9.7..."
+chmod +x MSAProbs-0.9.7/MSAProbs/msaprobs
+
+echo "Setting executable flag for GLProbs-1.0..."
+chmod +x GLProbs-1.0/glprobs