-#!/bin/bash
+#!/bin/sh
echo ""
echo "Setting executable flag for Clustalw..."
chmod +x clustalw/src/clustalw2
+echo "Setting executable flag for Clustal Omega..."
+chmod +x clustalo/src/clustalo
+
echo "Setting executable flag for Mafft..."
chmod +x mafft/binaries/*
+chmod +x mafft/scripts/*
echo "Setting executable flag for Mafft dependency fasta34 ..."
chmod +x fasta34/fasta34
echo "Setting executable flag for T-Coffee..."
chmod +x tcoffee/t_coffee_source/t_coffee
+echo "Setting executable flag for DisEMBL..."
+chmod +x disembl/disembl disembl/sav_gol disembl/DisEMBL.py
+
+echo "Setting executable flag for GlobPlot..."
+chmod +x globplot/GlobPlot.py globplot/sav_gol
+
+echo "Setting executable flag for IUPred..."
+chmod +x iupred/iupred
+
+#echo "Setting executable flag for Jpred..."
+#chmod +x jpred/i686/* jpred/x86_64/*
+
+echo "Setting executable flag for ViennaRNA..."
+chmod +x ViennaRNA/Progs/RNAalifold
+
+echo "Setting executable flag for MSAProbs-0.9.7..."
+chmod +x MSAProbs-0.9.7/MSAProbs/msaprobs
+
+echo "Setting executable flag for GLProbs-1.0..."
+chmod +x GLProbs-1.0/glprobs