JWS-112 Bumping version of T-Coffee to version 11.00.8cbe486.
[jabaws.git] / binaries / src / tcoffee / example / b30.aln
diff --git a/binaries/src/tcoffee/example/b30.aln b/binaries/src/tcoffee/example/b30.aln
new file mode 100644 (file)
index 0000000..7ccb2e1
--- /dev/null
@@ -0,0 +1,130 @@
+CLUSTAL FORMAT for T-COFFEE Version_4.32 [http://www.tcoffee.org], CPU=18.21 sec, SCORE=48, Nseq=19, Len=336 
+
+sp|O35205|GRAK_MOUSE   M---R----FSSW-------ALVSLVAGVYM----------------SSECFHTEIIGGR
+sp|Q7YRZ7|GRAA_BOVIN   M--NI----PFPF--SFPPAICLLLIPGVFP----------------VS---CEGIIGGN
+sp|P08884|GRAE_MOUSE   M--------PPV----------LILLTLLLP----------------L-GAGAEEIIGGH
+sp|Q06606|GRZ2_RAT     M--------FLF----------LFFLVAILP----------------V-NTEGGEIIWGT
+sp|P21844|MCPT5_MOUSE  M---H----LLT----------LHLLLLLLG----------------S-STKAGEIIGGT
+sp|P03953|CFAD_MOUSE   M---H----SSVY-------FVALVILGAAV----------------CAAQPRGRILGGQ
+sp|P00773|ELA1_RAT     M---L----RFLV--F----ASLVLYGHSTQ----------------DFPETNARVVGGA
+sp|Q00871|CTRB1_PENVA  MIGKL----SLLL--V----CVAVASGNPAAGKPWHWKSPKPLVDPRIHVNATPRIVGGV
+sp|P08246|ELNE_HUMAN   M--TLGR--RLAC--L----FLACVLPALLL----------------GGTALASEIVGGR
+sp|P20160|CAP7_HUMAN   M--T-----RLTV--L----ALLAGLLASSR----------------AGSSPLLDIVGGR
+sp|P80015|CAP7_PIG     -------------------------------------------------------IVGGR
+sp|Q03238|GRAM_RAT     L-------------------LLLLALKTLWA----------------VGNRFEAQIIGGR
+sp|P00757|KLKB4_MOUSE  M-----------W-------FLILFLALSLGGID-------------AAPP-----VQSQ
+sp|Q6H321|KLK2_HORSE   M-----------W-------FLVLCLDLSLGETG-------------ALPPIQSRIIGGW
+sp|Q91VE3|KLK7_MOUSE   M---------GVW-------LLSLITVLLSLALE-------------TAG-QGERIIDGY
+sp|Q9Y5K2|KLK4_HUMAN   M-ATAGN--PWGW-------FLGYLILGVAG-SL-------------VSG-SCSQIINGE
+sp|P29786|TRY3_AEDAE   M-------NQFLFVSF---------CALLDSAKVSAA------------TLSSGRIVGGF
+sp|P35037|TRY3_ANOGA   M---ISNKIAILLAVLVVAV----ACAQARVAQQHRSVQALPRFLPRPKYDVGHRIVGGF
+sp|P07338|CTRB1_RAT    M--A------FLWLVS---------CFALVGATFGCG---VPTIQPV--LTGLSRIVNGE
+                                                                               : . 
+
+sp|O35205|GRAK_MOUSE   EVQPHSRPFMASIQYR----SKHICGGVLIHPQWVLTAAHCYSWFPRGHSPTVVLGAHSL
+sp|Q7YRZ7|GRAA_BOVIN   EVAPHTRRYMALIK------GLKLCAGALIKENWVLTAAHCDLK----GNPQVILGAHST
+sp|P08884|GRAE_MOUSE   VVKPHSRPYMAFVKSVDIEGNRRYCGGFLVQDDFVLTAAHCRN-----RTMTVTLGAHNI
+sp|Q06606|GRZ2_RAT     ESKPHSRPYMAFIKFYDSNSEPHHCGGFLVAKDIVMTAAHCNG-----RNIKVTLGAHNI
+sp|P21844|MCPT5_MOUSE  ECIPHSRPYMAYLEIVTSENYLSACSGFLIRRNFVLTAAHCAG-----RSITVLLGAHNK
+sp|P03953|CFAD_MOUSE   EAAAHARPYMASVQVN----GTHVCGGTLLDEQWVLSAAHCMDGVTDDDSVQVLLGAHSL
+sp|P00773|ELA1_RAT     EARRNSWPSQISLQYLSGGSWYHTCGGTLIRRNWVMTAAHCVSSQM---TFRVVVGDHNL
+sp|Q00871|CTRB1_PENVA  EATPHSWPHQAALFID----DMYFCGGSLISSEWVLTAAHCMDGAG---FVEVVLGAHNI
+sp|P08246|ELNE_HUMAN   RARPHAWPFMVSLQLR----GGHFCGATLIAPNFVMSAAHCVANVNV-RAVRVVLGAHNL
+sp|P20160|CAP7_HUMAN   KARPRQFPFLASIQNQ----GRHFCGGALIHARFVMTAASCFQSQNP-GVSTVVLGAYDL
+sp|P80015|CAP7_PIG     RAQPQEFPFLASIQKQ----GRPFCAGALVHPRFVLTAASCFRGKNS-GSASVVLGAYDL
+sp|Q03238|GRAM_RAT     EAVPHSRPYMVSLQNT----KSHMCGGVLVHQKWVLTAAHCLSEP--LQQLKLVFGLHSL
+sp|P00757|KLKB4_MOUSE  VDCENSQPWHVAVYRF----NKYQCGGVLLDRNWVLTAAHCYN-----DKYQVWLGKNNF
+sp|Q6H321|KLK2_HORSE   ECEKHSKPWQVAVYHQ----GHFQCGGVLVHPQWVLTAAHCMS-----DDYQIWLGRHNL
+sp|Q91VE3|KLK7_MOUSE   KCKEGSHPWQVALLKG----NQLHCGGVLVDKYWVLTAAHCKM-----GQYQVQLGSDKI
+sp|Q9Y5K2|KLK4_HUMAN   DCSPHSQPWQAALVME----NELFCSGVLVHPQWVLSAAHCFQ-----NSYTIGLGLHSL
+sp|P29786|TRY3_AEDAE   QIDIAEVPHQVSLQRS----GRHFCGGSIISPRWVLTRAHCTTNTDP-AAYTIRAGSTD-
+sp|P35037|TRY3_ANOGA   EIDVSETPYQVSLQYF----NSHRCGGSVLNSKWILTAAHCTVNLQP-SSLAVRLGSSR-
+sp|P07338|CTRB1_RAT    DAIPGSWPWQVSLQDKT---GFHFCGGSLISEDWVVTAAHCGVKT----SDVVVAGEFDQ
+                                   :           *.. ::    ::: * *           :  *    
+
+sp|O35205|GRAK_MOUSE   SKN-EP-MKQTFEIKKFIPFSRLQSGS-----------ASH--DIMLIKLRTAAELNKNV
+sp|Q7YRZ7|GRAA_BOVIN   SHK-EK-LDQVFSIKKAIPYPCFDPQT-----------FEG--DLQLLQLEGKATMTKAV
+sp|P08884|GRAE_MOUSE   KAK-EE-TQQIIPVAKAIPHPDYNATA-----------FFS--DIMLLKLESKAKRTKAV
+sp|Q06606|GRZ2_RAT     KKQ-EN-T-QVISVVKAKPHENYDRDS-----------HFN--DIMLLKLERKAQLNGVV
+sp|P21844|MCPT5_MOUSE  TSK-ED-TWQKLEVEKQFLHPKYDENL-----------VVH--DIMLLKLKEKAKLTLGV
+sp|P03953|CFAD_MOUSE   SAP-EP-YKRWYDVQSVVPHPGSRPDS-----------LED--DLILFKLSQNASLGPHV
+sp|P00773|ELA1_RAT     SQN-DG-TEQYVSVQKIMVHPTWNSNN-----------VAAGYDIALLRLAQSVTLNNYV
+sp|Q00871|CTRB1_PENVA  RQN-EA-SQVSITSTDFFTHENWNSWL-----------LTN--DIALIRLPSPVSLNSNI
+sp|P08246|ELNE_HUMAN   SRR-EP-TRQVFAVQRI-FENGYDPVN-----------LLN--DIVILQLNGSATINANV
+sp|P20160|CAP7_HUMAN   RRR-ERQSRQTFSISSM-SENGYDPQQ-----------NLN--DLMLLQLDREANLTSSV
+sp|P80015|CAP7_PIG     RQQ-EQ-SRQTFSIRSI-SQNGYDPRQ-----------NLN--DVLLLQLDREARLTPSV
+sp|Q03238|GRAM_RAT     HDP-QD-PGLTFYIKQAIKHPGYNLK------------YEN--DLALLKLDGRVKPSKNV
+sp|P00757|KLKB4_MOUSE  LED-EP-SDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSN--DLMLLRLSKPADITDVV
+sp|Q6H321|KLK2_HORSE   SED-ED-TAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISH--DLMLLRLAQPARITDAV
+sp|Q91VE3|KLK7_MOUSE   GDQ----SAQKIKATKSFRHPGYSTKT-----------HVN--DIMLVRLDEPVKMSSKV
+sp|Q9Y5K2|KLK4_HUMAN   EADQEP-GSQMVEASLSVRHPEYNRPL-----------LAN--DLMLIKLDESVSESDTI
+sp|P29786|TRY3_AEDAE   ---RTN-GGIIVKVKSVIPHPQYNGDT-----------YNY--DFSLLELDESIGFSRSI
+sp|P35037|TRY3_ANOGA   ---HAS-GGTVVRVARVLEHPNYDDST-----------IDY--DFSLMELESELTFSDVV
+sp|P07338|CTRB1_RAT    GSD-EE-NIQVLKIAQVFKNPKFNMFT-----------VRN--DITLLKLATPAQFSETV
+                                                                  *. :..*         :
+
+sp|O35205|GRAK_MOUSE   QLLHLGSKN-Y-LRDGTKCQVTGWGTTK-PDLLTASDTLREVTVTIISRKRCNSQSYYNH
+sp|Q7YRZ7|GRAA_BOVIN   GILQLPRTEDD-VKPHTKCHVAGWGSTK-KDACQMSNALREANVTVIDRKICNDAQHYNF
+sp|P08884|GRAE_MOUSE   RPLKLPRPNAR-VKPGDVCSVAGWGSRS-INDTKASARLREAQLVIQEDEECKKR--FR-
+sp|Q06606|GRZ2_RAT     KTIALPRSQDW-VKPGQVCTVAGWGRLA-N--CTSSNTLQEVNLEVQKGQKCQDM--SE-
+sp|P21844|MCPT5_MOUSE  GTLPLSANFNF-IPPGRMCRAVGWGRTN-VNE-PASDTLQEVKMRLQEPQACKH---FT-
+sp|P03953|CFAD_MOUSE   RPLPLQYEDKE-VEPGTLCDVAGWGVVT-HAG-RRPDVLHQLRVSIMNRTTCNLRTY--H
+sp|P00773|ELA1_RAT     QLAVLPQEGTI-LANNNPCYITGWGRTR-TNG-QLSQTLQQAYLPSVDYSICSSSSYWG-
+sp|Q00871|CTRB1_PENVA  KTVKLPSSDVS-V--GTTVTPTGWGRPSDSAS-GISDVLRQVNVPVMTNADCDSV--YG-
+sp|P08246|ELNE_HUMAN   QVAQLPAQGRR-LGNGVQCLAMGWGLLG-RNR-GIASVLQELNVTVVT-SLCRR------
+sp|P20160|CAP7_HUMAN   TILPLPLQNAT-VEAGTRCQVAGWGSQR-SGG-RLSRFPRFVNVTVTPEDQCRP------
+sp|P80015|CAP7_PIG     ALVPLPPQNAT-VEAGTNCQVAGWGTQR-LRR-LFSRFPRVLNVTVTS-NPCLP------
+sp|Q03238|GRAM_RAT     KPLALPRKPRDKPAEGSRCSTAGWGITH-QRG-QLAKSLQELDLRLLDTRMCNNSRFW--
+sp|P00757|KLKB4_MOUSE  KPITLPTEEP---KLGSTCLASGWGSTTP-IKFKYPDDLQCVNLKLLPNEDCDKA--HE-
+sp|Q6H321|KLK2_HORSE   KILDLPTQEP---KLGSTCYTSGWGLIST-FTNRGSGTLQCVELRLQSNEKCARA--YP-
+sp|Q91VE3|KLK7_MOUSE   EAVQLPEHCE---PPGTSCTVSGWGTTTS-PDVTFPSDLMCSDVKLISSRECKKV--YK-
+sp|Q9Y5K2|KLK4_HUMAN   RSISIASQCP---TAGNSCLVSGWGLLAN-G--RMPTVLQCVNVSVVSEEVCSKL--YD-
+sp|P29786|TRY3_AEDAE   EAIALPDASET-VADGAMCTVSGWGDTK-NVF-EMNTLLRAVNVPSYNQAECAAA--LVN
+sp|P35037|TRY3_ANOGA   QPVSLPDQDEA-VEDGTMTIVSGWGNTQ-SAA-ESNAILRAANVPTVNQKECTIA--YSS
+sp|P07338|CTRB1_RAT    SAVCLPNVDDD-FPPGTVCATTGWGKTKY-NALKTPEKLQQAALPIVSEADCKKS--WG-
+                           :                 ***                  :       *        
+
+sp|O35205|GRAK_MOUSE   KPVITKDMICAGDARGQKDSCKGDSGGPLIC--KGI--FHALVSQGYK--CGIAKKPGIY
+sp|Q7YRZ7|GRAA_BOVIN   NPVIDLSMICAGGRKGEDDSCEGDSGSPLIC--DNV--FRGVTSFGK---CGNPQKPGIY
+sp|P08884|GRAE_MOUSE   -HYTETTEICAGDLKKIKTPFKGDSGGPLVC--DNK--AYGLLAYAKN----RTISSGVF
+sp|Q06606|GRZ2_RAT     -DYNDSIQLCVGNPSEGKATGKGDSGGPFVC--DGV--AQGIVSYRLC----TGTLPRVF
+sp|P21844|MCPT5_MOUSE  -SFRHNSQLCVGNPKKMQNVYKGDSGGPLLC--AGI--AQGIASYVHR----NAKPPAVF
+sp|P03953|CFAD_MOUSE   DGVVTINMMCAE--SNRRDTCRGDSGSPLVC--GDA--VEGVVTWGSRV-CGNGKKPGVY
+sp|P00773|ELA1_RAT     -STVKTTMVCAGG-DGVRSGCQGDSGGPLHCLVNGQYSVHGVTSFVSSMGCNVSKKPTVF
+sp|Q00871|CTRB1_PENVA  --IVGDGVVCIDG-TGGKSTCNGDSGGPLNL--NGM--TYGITSFGSSAGCE-KGYPAAF
+sp|P08246|ELNE_HUMAN   ------SNVCTLVRGRQAGVCFGDSGSPLVC--NGL--IHGIASFVRGG-CASGLYPDAF
+sp|P20160|CAP7_HUMAN   ------NNVCTGVLTRRGGICNGDGGTPLVC--EGL--AHGVASFSLGP-CGR--GPDFF
+sp|P80015|CAP7_PIG     ------RDMCIGVFSRRGRISQGDRGTPLVC--NGL--AQGVASFLRRR-FRR--SSGFF
+sp|Q03238|GRAM_RAT     NGVLTDSMLCLKAGAKGQAPCKGDSGGPLVCG-KGK--VDGILSFSSKN-CTDIFKPTVA
+sp|P00757|KLKB4_MOUSE  -MKVTDAMLCAGEMDGGSYTCEHDSGGPLIC--DGI--LQGITSWGPEP-CGEPTEPSVY
+sp|Q6H321|KLK2_HORSE   -EKMTEFVLCATHRDDSGSICLGDSGGALIC--DGV--FQGITSWGYSE-CADFNDNFVF
+sp|Q91VE3|KLK7_MOUSE   -DLLGKTMLCAGIPDSKTNTCNGDSGGPLVC--NDT--LQGLVSWGTYP-CGQPNDPGVY
+sp|Q9Y5K2|KLK4_HUMAN   -PLYHPSMFCAGGGQDQKDSCNGDSGGPLIC--NGY--LQGLVSFGKAP-CGQVGVPGVY
+sp|P29786|TRY3_AEDAE   VVPVTEQMICAGYAAGGKDSCQGDSGGPLVS--GDK--LVGVVSWGK--GCALPNLPGVY
+sp|P35037|TRY3_ANOGA   SGGITDRMLCAGYKRGGKDACQGDSGGPLVV--DGK--LVGVVSWGF--GCAMPGYPGVY
+sp|P07338|CTRB1_RAT    -SKITDVMTCAGA--SGVSSCMGDSGGPLVCQKDGVWTLAGIVSWGSGV-CSTS-TPAVY
+                                *             * * .:     .     .: :                
+
+sp|O35205|GRAK_MOUSE   TLLTKKYQTWIKSKLAPSR---------------AH
+sp|Q7YRZ7|GRAA_BOVIN   ILLTKKHLNWIKKTIAGAI-----------------
+sp|P08884|GRAE_MOUSE   TKIVH-FLPWISRNMKLL------------------
+sp|Q06606|GRZ2_RAT     TRISS-FIPWIQKTMKVLQ---------------QS
+sp|P21844|MCPT5_MOUSE  TRISH-YRPWINKILREN------------------
+sp|P03953|CFAD_MOUSE   TRVSS-YRMWIENITNGNM---------------TS
+sp|P00773|ELA1_RAT     TRVSA-YISWMNNVIAYT------------------
+sp|Q00871|CTRB1_PENVA  TRVYY-YLDWIQQKTGVT-----P------------
+sp|P08246|ELNE_HUMAN   APVAQ-FVNWIDSIIQRSEDNPCPHPRDPDPASRTH
+sp|P20160|CAP7_HUMAN   TRVAL-FRDWIDGVLNNPG----PGPA---------
+sp|P80015|CAP7_PIG     TRVAL-FRNWIDSVLNNP-----P------------
+sp|Q03238|GRAM_RAT     TAVAP-YSSWIRKVIGRWS----PQP--------LT
+sp|P00757|KLKB4_MOUSE  TKLIK-FSSWIRETMANNP-----------------
+sp|Q6H321|KLK2_HORSE   TKVMP-HLKWIKETIEKNS-----------------
+sp|Q91VE3|KLK7_MOUSE   TQVCK-YKRWVMETMKTHR-----------------
+sp|Q9Y5K2|KLK4_HUMAN   TNLCK-FTEWIEKTVQAS------------------
+sp|P29786|TRY3_AEDAE   ARVST-VRQWIREVSEV-------------------
+sp|P35037|TRY3_ANOGA   ARVAV-VRDWVRENSGA-------------------
+sp|P07338|CTRB1_RAT    SRVTA-LMPWVQQILEAN------------------
+                         :      *:                         
+
+
+