JWS-112 Bumping version of T-Coffee to version 11.00.8cbe486.
[jabaws.git] / binaries / src / tcoffee / example / p120.aln
diff --git a/binaries/src/tcoffee/example/p120.aln b/binaries/src/tcoffee/example/p120.aln
new file mode 100644 (file)
index 0000000..bd708ff
--- /dev/null
@@ -0,0 +1,130 @@
+CLUSTAL FORMAT for T-COFFEE Version_4.32 [http://www.tcoffee.org], CPU=18.23 sec, SCORE=48, Nseq=19, Len=331 
+
+sp|O35205|GRAK_MOUSE   M---------RFSSWALVSLVAG-----------------VYMSSECFHTEIIGGREVQP
+sp|Q7YRZ7|GRAA_BOVIN   M---N---IPFPFSFPPAICLLL-----------------IPGVFPVSCEGIIGGNEVAP
+sp|P08884|GRAE_MOUSE   M--------------PPVLILLT-----------------LLLPLGAGAEEIIGGHVVKP
+sp|Q06606|GRZ2_RAT     M--------------FLFLFFLV-----------------AILPVNTEGGEIIWGTESKP
+sp|P21844|MCPT5_MOUSE  M-------------HLLTLHLLL-----------------LLLGSSTKAGEIIGGTECIP
+sp|P03953|CFAD_MOUSE   M---------HSSVYFVALVILG-----------------AAVCAAQPRGRILGGQEAAA
+sp|P00773|ELA1_RAT     M------LR--FLVFASLVLYGH-----------------STQDFPETNARVVGGAEARR
+sp|Q00871|CTRB1_PENVA  M---IGKLS--LLLVCVAVASGNP-AAGKPWHWKSPKPLVDPRIHVNATPRIVGGVEATP
+sp|P08246|ELNE_HUMAN   M-----TLGRRLACLFLACVLPA-----------------LLLGGTALASEIVGGRRARP
+sp|P20160|CAP7_HUMAN   M--------TRLTVLALLAGLLA-----------------SSRAGSSPLLDIVGGRKARP
+sp|P80015|CAP7_PIG     ---------------------------------------------------IVGGRRAQP
+sp|Q03238|GRAM_RAT     --------------LLLLLALKT-----------------LWAVGNRFEAQIIGGREAVP
+sp|P00757|KLKB4_MOUSE  M---------WFLI--LFLALSLG----------------GIDA-----APPVQSQVDCE
+sp|Q6H321|KLK2_HORSE   M---------WFLV--LCLDLSLG----------------ETGALPPIQSRIIGGWECEK
+sp|Q91VE3|KLK7_MOUSE   M-------GVWLLS--LITVLLSL-----------------ALETAGQGERIIDGYKCKE
+sp|Q9Y5K2|KLK4_HUMAN   MATAGN--PWGWFL--GYLILGVA-----------------GSLVSGSCSQIINGEDCSP
+sp|P29786|TRY3_AEDAE   M------N-QFLFVSFCALLDSAKVSAATL-----------------SSGRIVGGFQIDI
+sp|P35037|TRY3_ANOGA   M--ISNKI-AILLAVLVVAVACAQARVAQQHRSVQALPRFLPRPKYDVGHRIVGGFEIDV
+sp|P07338|CTRB1_RAT    M-----AF---LWLVSCFALVGATFGCGVP----------TIQPVLTGLSRIVNGEDAIP
+                                                                           : .     
+
+sp|O35205|GRAK_MOUSE   HSRPFMASIQYR----SKHICGGVLIHPQWVLTAAHCYSWFPRGHSPTVVLGAHSLSKN-
+sp|Q7YRZ7|GRAA_BOVIN   HTRRYMALI--K----GLKLCAGALIKENWVLTAAHCDL----KGNPQVILGAHSTSHK-
+sp|P08884|GRAE_MOUSE   HSRPYMAFVKSVDIEGNRRYCGGFLVQDDFVLTAAHCRN-----RTMTVTLGAHNIKAK-
+sp|Q06606|GRZ2_RAT     HSRPYMAFIKFYDSNSEPHHCGGFLVAKDIVMTAAHCNG-----RNIKVTLGAHNIKKQ-
+sp|P21844|MCPT5_MOUSE  HSRPYMAYLEIVTSENYLSACSGFLIRRNFVLTAAHCAG-----RSITVLLGAHNKTSK-
+sp|P03953|CFAD_MOUSE   HARPYMASVQVN----GTHVCGGTLLDEQWVLSAAHCMDGVTDDDSVQVLLGAHSLSAP-
+sp|P00773|ELA1_RAT     NSWPSQISLQYLSGGSWYHTCGGTLIRRNWVMTAAHCVSSQ---MTFRVVVGDHNLSQN-
+sp|Q00871|CTRB1_PENVA  HSWPHQAALFIDD----MYFCGGSLISSEWVLTAAHCMDGA---GFVEVVLGAHNIRQN-
+sp|P08246|ELNE_HUMAN   HAWPFMVSLQLRG----GHFCGATLIAPNFVMSAAHCVANV-NVRAVRVVLGAHNLSRR-
+sp|P20160|CAP7_HUMAN   RQFPFLASIQNQG----RHFCGGALIHARFVMTAASCFQSQ-NPGVSTVVLGAYDLRRR-
+sp|P80015|CAP7_PIG     QEFPFLASIQKQG----RPFCAGALVHPRFVLTAASCFRGK-NSGSASVVLGAYDLRQQ-
+sp|Q03238|GRAM_RAT     HSRPYMVSLQNTK----SHMCGGVLVHQKWVLTAAHCLSEP--LQQLKLVFGLHSLHDP-
+sp|P00757|KLKB4_MOUSE  NSQPWHVAVYRF----NKYQCGGVLLDRNWVLTAAHCYN-----DKYQVWLGKNNFLED-
+sp|Q6H321|KLK2_HORSE   HSKPWQVAVYHQ----GHFQCGGVLVHPQWVLTAAHCMS-----DDYQIWLGRHNLSED-
+sp|Q91VE3|KLK7_MOUSE   GSHPWQVALLKG----NQLHCGGVLVDKYWVLTAAHCKM-----GQYQVQLGSDKIG---
+sp|Q9Y5K2|KLK4_HUMAN   HSQPWQAALVME----NELFCSGVLVHPQWVLSAAHCFQ-----NSYTIGLGLHSLEADQ
+sp|P29786|TRY3_AEDAE   AEVPHQVSLQRSG----RHFCGGSIISPRWVLTRAHCTTNT-DPAAYTIRAGS---TD-R
+sp|P35037|TRY3_ANOGA   SETPYQVSLQYFN----SHRCGGSVLNSKWILTAAHCTVNL-QPSSLAVRLGS---SR-H
+sp|P07338|CTRB1_RAT    GSWPWQVSLQDKT---GFHFCGGSLISEDWVVTAAHCGVKT-S---DVVVAGEFDQGSD-
+                               :           *.. ::    ::: * *           :  *        
+
+sp|O35205|GRAK_MOUSE   EPM-KQTFEIKKFIPFSRLQSG-----------SA--SHDIMLIKLRTAAELNKNVQLLH
+sp|Q7YRZ7|GRAA_BOVIN   EKL-DQVFSIKKAIPYPCFDPQ-----------TF--EGDLQLLQLEGKATMTKAVGILQ
+sp|P08884|GRAE_MOUSE   EET-QQIIPVAKAIPHPDYNAT-----------AF--FSDIMLLKLESKAKRTKAVRPLK
+sp|Q06606|GRZ2_RAT     ENT--QVISVVKAKPHENYDRD-----------SH--FNDIMLLKLERKAQLNGVVKTIA
+sp|P21844|MCPT5_MOUSE  EDT-WQKLEVEKQFLHPKYDEN-----------LV--VHDIMLLKLKEKAKLTLGVGTLP
+sp|P03953|CFAD_MOUSE   EPY-KRWYDVQSVVPHPGSRPD-----------SL--EDDLILFKLSQNASLGPHVRPLP
+sp|P00773|ELA1_RAT     DGT-EQYVSVQKIMVHPTWNSN-----------NVAAGYDIALLRLAQSVTLNNYVQLAV
+sp|Q00871|CTRB1_PENVA  EAS-QVSITSTDFFTHENWNSW-----------LL--TNDIALIRLPSPVSLNSNIKTVK
+sp|P08246|ELNE_HUMAN   EPT-RQVFAVQR-IFENGYDPV-----------NL--LNDIVILQLNGSATINANVQVAQ
+sp|P20160|CAP7_HUMAN   ERQSRQTFSISS-MSENGYDPQ-----------QN--LNDLMLLQLDREANLTSSVTILP
+sp|P80015|CAP7_PIG     EQS-RQTFSIRS-ISQNGYDPR-----------QN--LNDVLLLQLDREARLTPSVALVP
+sp|Q03238|GRAM_RAT     QDP-GLTFYIKQAIKHPGYNLK------------Y--ENDLALLKLDGRVKPSKNVKPLA
+sp|P00757|KLKB4_MOUSE  EPS-DQHRLVSKAIPHPDFNMSLLNEHTPQPEDDY--SNDLMLLRLSKPADITDVVKPIT
+sp|Q6H321|KLK2_HORSE   EDT-AQFHQVSDSFLDPQFDLSLLKKKYLRPYDDI--SHDLMLLRLAQPARITDAVKILD
+sp|Q91VE3|KLK7_MOUSE   DQS-AQKIKATKSFRHPGYSTK-----------TH--VNDIMLVRLDEPVKMSSKVEAVQ
+sp|Q9Y5K2|KLK4_HUMAN   EPG-SQMVEASLSVRHPEYNRP-----------LL--ANDLMLIKLDESVSESDTIRSIS
+sp|P29786|TRY3_AEDAE   TNG-GIIVKVKSVIPHPQYNGD-----------TY--NYDFSLLELDESIGFSRSIEAIA
+sp|P35037|TRY3_ANOGA   ASG-GTVVRVARVLEHPNYDDS-----------TI--DYDFSLMELESELTFSDVVQPVS
+sp|P07338|CTRB1_RAT    EEN-IQVLKIAQVFKNPKFNMF-----------TV--RNDITLLKLATPAQFSETVSAVC
+                                                              *. :..*         :    
+
+sp|O35205|GRAK_MOUSE   LGSKN--YLRDGTKCQVTGWGTTKPDLLTASDTLREVTVTIISRKRCNSQSYYNHKPVIT
+sp|Q7YRZ7|GRAA_BOVIN   LPRTED-DVKPHTKCHVAGWGSTKKDACQMSNALREANVTVIDRKICNDAQHYNFNPVID
+sp|P08884|GRAE_MOUSE   LPRPNA-RVKPGDVCSVAGWGSRSINDTKASARLREAQLVIQEDEECKKRF----RHYTE
+sp|Q06606|GRZ2_RAT     LPRSQD-WVKPGQVCTVAGWGRLAN--CTSSNTLQEVNLEVQKGQKCQDMS----EDYND
+sp|P21844|MCPT5_MOUSE  LSANFN-FIPPGRMCRAVGWGRTNVNE-PASDTLQEVKMRLQEPQACKHF-----TSFRH
+sp|P03953|CFAD_MOUSE   LQYEDK-EVEPGTLCDVAGWGVVTHAG-RRPDVLHQLRVSIMNRTTCNLRTY--HDGVVT
+sp|P00773|ELA1_RAT     LPQEGT-ILANNNPCYITGWGRTRTN-GQLSQTLQQAYLPSVDYSICSSSSY--WGSTVK
+sp|Q00871|CTRB1_PENVA  LPSSDV---SVGTTVTPTGWGRPSDSASGISDVLRQVNVPVMTNADCDSVY-----GIVG
+sp|P08246|ELNE_HUMAN   LPAQGR-RLGNGVQCLAMGWGLLGRN-RGIASVLQELNVTVVT-SLCRR-----------
+sp|P20160|CAP7_HUMAN   LPLQNA-TVEAGTRCQVAGWGSQRSG-GRLSRFPRFVNVTVTPEDQCRP-----------
+sp|P80015|CAP7_PIG     LPPQNA-TVEAGTNCQVAGWGTQRLR-RLFSRFPRVLNVTVTS-NPCLP-----------
+sp|Q03238|GRAM_RAT     LPRKPRDKPAEGSRCSTAGWGITHQRG-QLAKSLQELDLRLLDTRMCNNSRF--WNGVLT
+sp|P00757|KLKB4_MOUSE  LPTEEP---KLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAH----EMKVT
+sp|Q6H321|KLK2_HORSE   LPTQEP---KLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAY----PEKMT
+sp|Q91VE3|KLK7_MOUSE   LPEHCE---PPGTSCTVSGWGTTTSPDVTFPSDLMCSDVKLISSRECKKVY----KDLLG
+sp|Q9Y5K2|KLK4_HUMAN   IASQCP---TAGNSCLVSGWGLLANG--RMPTVLQCVNVSVVSEEVCSKLY----DPLYH
+sp|P29786|TRY3_AEDAE   LPDASE-TVADGAMCTVSGWGDTKNV-FEMNTLLRAVNVPSYNQAECAAALV--NVVPVT
+sp|P35037|TRY3_ANOGA   LPDQDE-AVEDGTMTIVSGWGNTQSA-AESNAILRAANVPTVNQKECTIAYS--SSGGIT
+sp|P07338|CTRB1_RAT    LPNVDD-DFPPGTVCATTGWGKTKYNALKTPEKLQQAALPIVSEADCKKSW----GSKIT
+                       :                 ***                 :       *             
+
+sp|O35205|GRAK_MOUSE   KDMICAGDARGQKDSCKGDSGGPLIC--KG--IFHALVSQGYK--CGIAKKPGIYTLLTK
+sp|Q7YRZ7|GRAA_BOVIN   LSMICAGGRKGEDDSCEGDSGSPLIC--DN--VFRGVTSFGK---CGNPQKPGIYILLTK
+sp|P08884|GRAE_MOUSE   TTEICAGDLKKIKTPFKGDSGGPLVC--DN--KAYGLLAYAKN----RTISSGVFTKIVH
+sp|Q06606|GRZ2_RAT     SIQLCVGNPSEGKATGKGDSGGPFVC--DG--VAQGIVSYRLC----TGTLPRVFTRISS
+sp|P21844|MCPT5_MOUSE  NSQLCVGNPKKMQNVYKGDSGGPLLC--AG--IAQGIASYVHR----NAKPPAVFTRISH
+sp|P03953|CFAD_MOUSE   INMMCAE--SNRRDTCRGDSGSPLVC--GD--AVEGVVTWGSR-VCGNGKKPGVYTRVSS
+sp|P00773|ELA1_RAT     TTMVCAGG-DGVRSGCQGDSGGPLHCLVNGQYSVHGVTSFVSSMGCNVSKKPTVFTRVSA
+sp|Q00871|CTRB1_PENVA  DGVVCIDG-TGGKSTCNGDSGGPLNL--NG--MTYGITSFGSS-AGCEKGYPAAFTRVYY
+sp|P08246|ELNE_HUMAN   -SNVCTLVRGRQAGVCFGDSGSPLVC--NG--LIHGIASFVRG-GCASGLYPDAFAPVAQ
+sp|P20160|CAP7_HUMAN   -NNVCTGVLTRRGGICNGDGGTPLVC--EG--LAHGVASFSLG-PCGR--GPDFFTRVAL
+sp|P80015|CAP7_PIG     -RDMCIGVFSRRGRISQGDRGTPLVC--NG--LAQGVASFLRR-RFRR--SSGFFTRVAL
+sp|Q03238|GRAM_RAT     DSMLCLKAGAKGQAPCKGDSGGPLVC--GK-GKVDGILSFSSK-NCTDIFKPTVATAVAP
+sp|P00757|KLKB4_MOUSE  DAMLCAGEMDGGSYTCEHDSGGPLIC--DG--ILQGITSWGPE-PCGEPTEPSVYTKLIK
+sp|Q6H321|KLK2_HORSE   EFVLCATHRDDSGSICLGDSGGALIC--DG--VFQGITSWGYS-ECADFNDNFVFTKVMP
+sp|Q91VE3|KLK7_MOUSE   KTMLCAGIPDSKTNTCNGDSGGPLVC--ND--TLQGLVSWGTY-PCGQPNDPGVYTQVCK
+sp|Q9Y5K2|KLK4_HUMAN   PSMFCAGGGQDQKDSCNGDSGGPLIC--NG--YLQGLVSFGKA-PCGQVGVPGVYTNLCK
+sp|P29786|TRY3_AEDAE   EQMICAGYAAGGKDSCQGDSGGPLVS--GD--KLVGVVSWGKG--CALPNLPGVYARVST
+sp|P35037|TRY3_ANOGA   DRMLCAGYKRGGKDACQGDSGGPLVV--DG--KLVGVVSWGFG--CAMPGYPGVYARVAV
+sp|P07338|CTRB1_RAT    DVMTCAGA--SGVSSCMGDSGGPLVCQKDGVWTLAGIVSWGSG-VCS-TSTPAVYSRVTA
+                           *             * * .:           .: :                  :  
+
+sp|O35205|GRAK_MOUSE   KYQTWIKSKLAPSRAH---------------
+sp|Q7YRZ7|GRAA_BOVIN   KHLNWIKKTIAGAI-----------------
+sp|P08884|GRAE_MOUSE   -FLPWISRNMKLL------------------
+sp|Q06606|GRZ2_RAT     -FIPWIQKTMKVLQQS---------------
+sp|P21844|MCPT5_MOUSE  -YRPWINKILREN------------------
+sp|P03953|CFAD_MOUSE   -YRMWIENITNGNMTS---------------
+sp|P00773|ELA1_RAT     -YISWMNNVIAYT------------------
+sp|Q00871|CTRB1_PENVA  -YLDWIQQKTGVTP-----------------
+sp|P08246|ELNE_HUMAN   -FVNWIDSIIQRSEDNPCPHPRDPDPASRTH
+sp|P20160|CAP7_HUMAN   -FRDWIDGVLNNPGPGP-------------A
+sp|P80015|CAP7_PIG     -FRNWIDSVLNNPP-----------------
+sp|Q03238|GRAM_RAT     -YSSWIRKVIGRWSPQPL------------T
+sp|P00757|KLKB4_MOUSE  -FSSWIRETMANNP-----------------
+sp|Q6H321|KLK2_HORSE   -HLKWIKETIEKNS-----------------
+sp|Q91VE3|KLK7_MOUSE   -YKRWVMETMKTHR-----------------
+sp|Q9Y5K2|KLK4_HUMAN   -FTEWIEKTVQAS------------------
+sp|P29786|TRY3_AEDAE   -VRQWIREVSEV-------------------
+sp|P35037|TRY3_ANOGA   -VRDWVRENSGA-------------------
+sp|P07338|CTRB1_RAT    -LMPWVQQILEAN------------------
+                           *:                         
+
+
+