JWS-112 Bumping version of T-Coffee to version 11.00.8cbe486.
[jabaws.git] / binaries / src / tcoffee / example / p350.aln
diff --git a/binaries/src/tcoffee/example/p350.aln b/binaries/src/tcoffee/example/p350.aln
new file mode 100644 (file)
index 0000000..0bcf576
--- /dev/null
@@ -0,0 +1,130 @@
+CLUSTAL FORMAT for T-COFFEE Version_4.32 [http://www.tcoffee.org], CPU=18.33 sec, SCORE=48, Nseq=19, Len=334 
+
+sp|O35205|GRAK_MOUSE   MRF-S--------SWALVSLV-A----------------GVYMSSECFHTEIIGGREVQP
+sp|Q7YRZ7|GRAA_BOVIN   MNI-PFP--FSFPPAICLLLI-P----------------GVF-PVSC--EGIIGGNEVAP
+sp|P08884|GRAE_MOUSE   M-P-P--------VLILLTLL---------------------LPLGAGAEEIIGGHVVKP
+sp|Q06606|GRZ2_RAT     M-F-L--------FLFFLVAI---------------------LPVNTEGGEIIWGTESKP
+sp|P21844|MCPT5_MOUSE  MHL-L--------TLHLLLLL---------------------LGSSTKAGEIIGGTECIP
+sp|P03953|CFAD_MOUSE   MHS-S----VYFVALV----I-L----------------GAAVCAAQPRGRILGGQEAAA
+sp|P00773|ELA1_RAT     M--------LRFLVFASLVLY-G----------------HSTQDFPETNARVVGGAEARR
+sp|Q00871|CTRB1_PENVA  M---IGK--LSLLLVCVAVAS-GNPAAGKPWHWKSPKPLVDPRIHVNATPRIVGGVEATP
+sp|P08246|ELNE_HUMAN   MTL-GRR----LACLFLACVL-P----------------ALLLGGTALASEIVGGRRARP
+sp|P20160|CAP7_HUMAN   M----TR----LTVLALLAGL-L----------------ASSRAGSSPLLDIVGGRKARP
+sp|P80015|CAP7_PIG     ---------------------------------------------------IVGGRRAQP
+sp|Q03238|GRAM_RAT     --------------LLLLLAL-K----------------TLWAVGNRFEAQIIGGREAVP
+sp|P00757|KLKB4_MOUSE  M---------WFLIL-FLALSLGGID-----------------AAPP----VQSQVDC-E
+sp|Q6H321|KLK2_HORSE   M---------WFLVL-CLDLSLGETG-----------------ALPPIQSRIIGGWECEK
+sp|Q91VE3|KLK7_MOUSE   MGV-------WLLSL-ITVLLSL-AL-----------------ETAGQGERIIDGYKCKE
+sp|Q9Y5K2|KLK4_HUMAN   MATAGNPW-GWFLGY--LILGVA-GS-----------------LVSGSCSQIINGEDCSP
+sp|P29786|TRY3_AEDAE   MN--Q----FLFVSFC-ALLDSAKVSAAT-----------------LSSGRIVGGFQIDI
+sp|P35037|TRY3_ANOGA   MI--SNKIAILLAVLV-VAVACAQARVAQQHRSVQALPRFLPRPKYDVGHRIVGGFEIDV
+sp|P07338|CTRB1_RAT    MAF------LWLVS--CFALVGATFGCGVP----------TIQPVLTGLSRIVNGEDAIP
+                                                                          :        
+
+sp|O35205|GRAK_MOUSE   HSRPFMASIQYR----SK--HICGGVLIHPQWVLTAAHCYSWFPRGHSPTVVLGAHSLSK
+sp|Q7YRZ7|GRAA_BOVIN   HTRRYMALIK------GL--KLCAGALIKENWVLTAAHCD----LKGNPQVILGAHSTSH
+sp|P08884|GRAE_MOUSE   HSRPYMAFVKSVDIEGNR--RYCGGFLVQDDFVLTAAHCRN-----RTMTVTLGAHNIKA
+sp|Q06606|GRZ2_RAT     HSRPYMAFIKFYDSNSEP--HHCGGFLVAKDIVMTAAHCNG-----RNIKVTLGAHNIKK
+sp|P21844|MCPT5_MOUSE  HSRPYMAYLEIVTSENYL--SACSGFLIRRNFVLTAAHCAG-----RSITVLLGAHNKTS
+sp|P03953|CFAD_MOUSE   HARPYMASVQVN----GT--HVCGGTLLDEQWVLSAAHCMDGVTDDDSVQVLLGAHSLSA
+sp|P00773|ELA1_RAT     NSWPSQISLQYLS--GGSWYHTCGGTLIRRNWVMTAAHCVSSQ---MTFRVVVGDHNLSQ
+sp|Q00871|CTRB1_PENVA  HSWPHQAALFI----DDM--YFCGGSLISSEWVLTAAHCMDGA---GFVEVVLGAHNIRQ
+sp|P08246|ELNE_HUMAN   HAWPFMVSLQL----RGG--HFCGATLIAPNFVMSAAHCVANV-NVRAVRVVLGAHNLSR
+sp|P20160|CAP7_HUMAN   RQFPFLASIQN----QGR--HFCGGALIHARFVMTAASCFQSQ-NPGVSTVVLGAYDLRR
+sp|P80015|CAP7_PIG     QEFPFLASIQK----QGR--PFCAGALVHPRFVLTAASCFRGK-NSGSASVVLGAYDLRQ
+sp|Q03238|GRAM_RAT     HSRPYMVSLQNT----KS--HMCGGVLVHQKWVLTAAHCLSEP--LQQLKLVFGLHSLHD
+sp|P00757|KLKB4_MOUSE  NSQPWHVAVYRF----NK--YQCGGVLLDRNWVLTAAHCYN-----DKYQVWLGKNNFLE
+sp|Q6H321|KLK2_HORSE   HSKPWQVAVYHQ----GH--FQCGGVLVHPQWVLTAAHCMS-----DDYQIWLGRHNLSE
+sp|Q91VE3|KLK7_MOUSE   GSHPWQVALLKG----NQ--LHCGGVLVDKYWVLTAAHCKM-----GQYQVQLGSDKIGD
+sp|Q9Y5K2|KLK4_HUMAN   HSQPWQAALVME----NE--LFCSGVLVHPQWVLSAAHCFQ-----NSYTIGLGLHSLEA
+sp|P29786|TRY3_AEDAE   AEVPHQVSLQRS----GR--HFCGGSIISPRWVLTRAHCTTNT-DPAAYTIRAGS---TD
+sp|P35037|TRY3_ANOGA   SETPYQVSLQYF----NS--HRCGGSVLNSKWILTAAHCTVNL-QPSSLAVRLGS---SR
+sp|P07338|CTRB1_RAT    GSWPWQVSLQDK----TG-FHFCGGSLISEDWVVTAAHCGVKT----SDVVVAGEFDQGS
+                               :             *.. ::    ::: * *           :  *      
+
+sp|O35205|GRAK_MOUSE   N-EPM-KQTFEIKKFIPFSRLQSGS-----------AS--HDIMLIKLRTAAELNKNVQL
+sp|Q7YRZ7|GRAA_BOVIN   K-EKL-DQVFSIKKAIPYPCFDPQT-----------FE--GDLQLLQLEGKATMTKAVGI
+sp|P08884|GRAE_MOUSE   K-EET-QQIIPVAKAIPHPDYNATA-----------FF--SDIMLLKLESKAKRTKAVRP
+sp|Q06606|GRZ2_RAT     Q-ENT--QVISVVKAKPHENYDRDS-----------HF--NDIMLLKLERKAQLNGVVKT
+sp|P21844|MCPT5_MOUSE  K-EDT-WQKLEVEKQFLHPKYDENL-----------VV--HDIMLLKLKEKAKLTLGVGT
+sp|P03953|CFAD_MOUSE   P-EPY-KRWYDVQSVVPHPGSRPDS-----------LE--DDLILFKLSQNASLGPHVRP
+sp|P00773|ELA1_RAT     N-DGT-EQYVSVQKIMVHPTWNSNN-----------VAAGYDIALLRLAQSVTLNNYVQL
+sp|Q00871|CTRB1_PENVA  N-EAS-QVSITSTDFFTHENWNSWL-----------LT--NDIALIRLPSPVSLNSNIKT
+sp|P08246|ELNE_HUMAN   R-EPT-RQVFAVQRI-FENGYDPVN-----------LL--NDIVILQLNGSATINANVQV
+sp|P20160|CAP7_HUMAN   R-ERQSRQTFSISSM-SENGYDPQQ-----------NL--NDLMLLQLDREANLTSSVTI
+sp|P80015|CAP7_PIG     Q-EQS-RQTFSIRSI-SQNGYDPRQ-----------NL--NDVLLLQLDREARLTPSVAL
+sp|Q03238|GRAM_RAT     P-QDP-GLTFYIKQAIKHPGYNLK------------YE--NDLALLKLDGRVKPSKNVKP
+sp|P00757|KLKB4_MOUSE  D-EPS-DQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYS--NDLMLLRLSKPADITDVVKP
+sp|Q6H321|KLK2_HORSE   D-EDT-AQFHQVSDSFLDPQFDLSLLKKKYLRPYDDIS--HDLMLLRLAQPARITDAVKI
+sp|Q91VE3|KLK7_MOUSE   ---QS-AQKIKATKSFRHPGYSTKT-----------HV--NDIMLVRLDEPVKMSSKVEA
+sp|Q9Y5K2|KLK4_HUMAN   DQEPG-SQMVEASLSVRHPEYNRPL-----------LA--NDLMLIKLDESVSESDTIRS
+sp|P29786|TRY3_AEDAE   -RTNG-GIIVKVKSVIPHPQYNGDT-----------YN--YDFSLLELDESIGFSRSIEA
+sp|P35037|TRY3_ANOGA   -HASG-GTVVRVARVLEHPNYDDST-----------ID--YDFSLMELESELTFSDVVQP
+sp|P07338|CTRB1_RAT    D-EEN-IQVLKIAQVFKNPKFNMFT-----------VR--NDITLLKLATPAQFSETVSA
+                                                                *. :..*         :  
+
+sp|O35205|GRAK_MOUSE   LHLGSKN--YLRDGTKCQVTGWGTTKPDLLTASDTLREVTVTIISRKRCNSQSYYNHKPV
+sp|Q7YRZ7|GRAA_BOVIN   LQLPRTE-DDVKPHTKCHVAGWGSTKKDACQMSNALREANVTVIDRKICNDAQHYNFNPV
+sp|P08884|GRAE_MOUSE   LKLPRPN-ARVKPGDVCSVAGWGSRSINDTKASARLREAQLVIQEDEECKKRF----RHY
+sp|Q06606|GRZ2_RAT     IALPRSQ-DWVKPGQVCTVAGWGRLA--NCTSSNTLQEVNLEVQKGQKCQDMS----EDY
+sp|P21844|MCPT5_MOUSE  LPLSANF-NFIPPGRMCRAVGWGRTNVN-EPASDTLQEVKMRLQEPQACKH-F----TSF
+sp|P03953|CFAD_MOUSE   LPLQYED-KEVEPGTLCDVAGWGVVTHA-GRRPDVLHQLRVSIMNRTTCNLRTY--HDGV
+sp|P00773|ELA1_RAT     AVLPQEG-TILANNNPCYITGWGRTRTN-GQLSQTLQQAYLPSVDYSICSSSSYWG--ST
+sp|Q00871|CTRB1_PENVA  VKLPSSD-V--SVGTTVTPTGWGRPSDSASGISDVLRQVNVPVMTNADCDSV--YG---I
+sp|P08246|ELNE_HUMAN   AQLPAQG-RRLGNGVQCLAMGWGLLGRN-RGIASVLQELNVTVVT-SLCRR---------
+sp|P20160|CAP7_HUMAN   LPLPLQN-ATVEAGTRCQVAGWGSQRSG-GRLSRFPRFVNVTVTPEDQCRP---------
+sp|P80015|CAP7_PIG     VPLPPQN-ATVEAGTNCQVAGWGTQRLR-RLFSRFPRVLNVTVT-SNPCLP---------
+sp|Q03238|GRAM_RAT     LALPRKPRDKPAEGSRCSTAGWGITHQR-GQLAKSLQELDLRLLDTRMCNNSRFWN--GV
+sp|P00757|KLKB4_MOUSE  ITLPTEE-PK--LGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAH----EMK
+sp|Q6H321|KLK2_HORSE   LDLPTQE-PK--LGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAY----PEK
+sp|Q91VE3|KLK7_MOUSE   VQLPEHC-EP--PGTSCTVSGWGTTTSPDVTFPSDLMCSDVKLISSRECKKVY----KDL
+sp|Q9Y5K2|KLK4_HUMAN   ISIASQC-PT--AGNSCLVSGWGLLANG--RMPTVLQCVNVSVVSEEVCSKLY----DPL
+sp|P29786|TRY3_AEDAE   IALPDAS-ETVADGAMCTVSGWGDTKNV-FEMNTLLRAVNVPSYNQAECAAALV--NVVP
+sp|P35037|TRY3_ANOGA   VSLPDQD-EAVEDGTMTIVSGWGNTQSA-AESNAILRAANVPTVNQKECTIAYS--SSGG
+sp|P07338|CTRB1_RAT    VCLPNVD-DDFPPGTVCATTGWGKTKYNALKTPEKLQQAALPIVSEADCKKSW----GSK
+                         :                 ***                 :       *           
+
+sp|O35205|GRAK_MOUSE   ITKDMICAGDARGQKDSCKGDSGGPLIC--K-G--IFHALVSQGYK--CGIAKKPGIYTL
+sp|Q7YRZ7|GRAA_BOVIN   IDLSMICAGGRKGEDDSCEGDSGSPLIC--D-N--VFRGVTSFGK---CGNPQKPGIYIL
+sp|P08884|GRAE_MOUSE   TETTEICAGDLKKIKTPFKGDSGGPLVC--D-N--KAYGLLAYAKN----RTISSGVFTK
+sp|Q06606|GRZ2_RAT     NDSIQLCVGNPSEGKATGKGDSGGPFVC--D-G--VAQGIVSYRLC----TGTLPRVFTR
+sp|P21844|MCPT5_MOUSE  RHNSQLCVGNPKKMQNVYKGDSGGPLLC--A-G--IAQGIASYVHR----NAKPPAVFTR
+sp|P03953|CFAD_MOUSE   VTINMMCAES--NRRDTCRGDSGSPLVC--G-D--AVEGVVTWGSRV-CGNGKKPGVYTR
+sp|P00773|ELA1_RAT     VKTTMVCAGG-DGVRSGCQGDSGGPLHCLVN-GQYSVHGVTSFVSSMGCNVSKKPTVFTR
+sp|Q00871|CTRB1_PENVA  VGDGVVCIDG-TGGKSTCNGDSGGPLNL--N-G--MTYGITSFGSSAGCE-KGYPAAFTR
+sp|P08246|ELNE_HUMAN   ---SNVCTLVRGRQAGVCFGDSGSPLVC--N-G--LIHGIASFVRGG-CASGLYPDAFAP
+sp|P20160|CAP7_HUMAN   ---NNVCTGVLTRRGGICNGDGGTPLVC--E-G--LAHGVASFSLGP-CGR--GPDFFTR
+sp|P80015|CAP7_PIG     ---RDMCIGVFSRRGRISQGDRGTPLVC--N-G--LAQGVASFLRRR-FRR--SSGFFTR
+sp|Q03238|GRAM_RAT     LTDSMLCLKAGAKGQAPCKGDSGGPLVC--GKG--KVDGILSFSSKN-CTDIFKPTVATA
+sp|P00757|KLKB4_MOUSE  VTDAMLCAGEMDGGSYTCEHDSGGPLIC--D-G--ILQGITSWGPEP-CGEPTEPSVYTK
+sp|Q6H321|KLK2_HORSE   MTEFVLCATHRDDSGSICLGDSGGALIC--D-G--VFQGITSWGYSE-CADFNDNFVFTK
+sp|Q91VE3|KLK7_MOUSE   LGKTMLCAGIPDSKTNTCNGDSGGPLVC--N-D--TLQGLVSWGTYP-CGQPNDPGVYTQ
+sp|Q9Y5K2|KLK4_HUMAN   YHPSMFCAGGGQDQKDSCNGDSGGPLIC--N-G--YLQGLVSFGKAP-CGQVGVPGVYTN
+sp|P29786|TRY3_AEDAE   VTEQMICAGYAAGGKDSCQGDSGGPLVS--G-D--KLVGVVSWGK--GCALPNLPGVYAR
+sp|P35037|TRY3_ANOGA   ITDRMLCAGYKRGGKDACQGDSGGPLVV--D-G--KLVGVVSWGF--GCAMPGYPGVYAR
+sp|P07338|CTRB1_RAT    ITDVMTCAGA--SGVSSCMGDSGGPLVCQKD-GVWTLAGIVSWGSGV-CST-STPAVYSR
+                             *             * * .:      .     .: :                  
+
+sp|O35205|GRAK_MOUSE   LTKKYQTWIKSKLAPSRAH---------------
+sp|Q7YRZ7|GRAA_BOVIN   LTKKHLNWIKKTIAGAI-----------------
+sp|P08884|GRAE_MOUSE   IVH-FLPWISRNMKLL------------------
+sp|Q06606|GRZ2_RAT     ISS-FIPWIQKTMKVLQQS---------------
+sp|P21844|MCPT5_MOUSE  ISH-YRPWINKILREN------------------
+sp|P03953|CFAD_MOUSE   VSS-YRMWIENITNGNMTS---------------
+sp|P00773|ELA1_RAT     VSA-YISWMNNVIAYT------------------
+sp|Q00871|CTRB1_PENVA  VYY-YLDWIQQKTGVTP-----------------
+sp|P08246|ELNE_HUMAN   VAQ-FVNWIDSIIQRSEDNPCPHPRDPDPASRTH
+sp|P20160|CAP7_HUMAN   VAL-FRDWIDGVLNNPGPGP-------------A
+sp|P80015|CAP7_PIG     VAL-FRNWIDSVLNNPP-----------------
+sp|Q03238|GRAM_RAT     VAP-YSSWIRKVIGRWSPQP---------LT---
+sp|P00757|KLKB4_MOUSE  LIK-FSSWIRETMANNP-----------------
+sp|Q6H321|KLK2_HORSE   VMP-HLKWIKETIEKNS-----------------
+sp|Q91VE3|KLK7_MOUSE   VCK-YKRWVMETMKTHR-----------------
+sp|Q9Y5K2|KLK4_HUMAN   LCK-FTEWIEKTVQAS------------------
+sp|P29786|TRY3_AEDAE   VST-VRQWIREVSEV-------------------
+sp|P35037|TRY3_ANOGA   VAV-VRDWVRENSGA-------------------
+sp|P07338|CTRB1_RAT    VTA-LMPWVQQILEAN------------------
+                       :      *:                         
+
+
+