JWS-112 Bumping version of T-Coffee to version 11.00.8cbe486.

[jabaws.git] / binaries / src / tcoffee / example / prf1.fasta

diff --git a/binaries/src/tcoffee/example/prf1.fasta b/binaries/src/tcoffee/example/prf1.fasta
new file mode 100644 (file)
index 0000000..8f2b599
--- /dev/null
+++ b/binaries/src/tcoffee/example/prf1.fasta
@@ -0,0 +1,77 @@
+>sp|P08311|CATG_HUMAN Cathepsin G precursor (EC 3.4.21.20) (CG) - Homo sapiens (Human).
+MQPLLLLLAFLLPTGAEAGEIIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVL
+TAAHCWGSNINVTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRR
+NRNVNPVALPRAQEGLRPGTLCTVAGWGRVSMRRGTDTLREVQLRVQRDRQCLRIFGSYD
+PRRQICVGDRRERKAAFKGDSGGPLLCNNVAHGIVSYGKSSGVPPEVFTRVSSFLPWIRT
+TMRSFKLLDQMETPL
+>sp|P28293|CATG_MOUSE Cathepsin G precursor (EC 3.4.21.20) (Vimentin-specific protease) (VSP) - Mus musculus (Mouse).
+MQPLLLLLTFILLQGDEAGKIIGGREARPHSYPYMAFLLIQSPEGLSACGGFLVREDFVL
+TAAHCLGSSINVTLGAHNIQMRERTQQLITVLRAIRHPDYNPQNIRNDIMLLQLRRRARR
+SGSVKPVALPQASKKLQPGDLCTVAGWGRVSQSRGTNVLQEVQLRVQMDQMCANRFQFYN
+SQTQICVGNPRERKSAFRGDSGGPLVCSNVAQGIVSYGSNNGNPPAVFTKIQSFMPWIKR
+TMRRFAPRYQRPANSLSQAQT
+>sp|P80931|MCT1A_SHEEP Mast cell protease 1A precursor (EC 3.4.21.-) (SMCP-1A) - Ovis aries (Sheep).
+MVLFLLLVALLSPAGEAGKIIGGHEAKPHSRPYMAFLQIKISGKSYRCGGFLVHEDFVLT
+AAHCLGSSISVTLGAHNIVDRERTQQVIQVRRAIPHPHYNDKTLANDIMLLQLTRKAEMS
+DAVSPINLPRSLEKVKPGMMCSVAGWGQLGVNMPSADKLQEVNLEVQSEEECIARFKNYI
+PITQICAGDSTKRKNSFSGDSGGPLVCNGVAQGIVSYGKDDGTTPDVYTRISSFLSWIQR
+TMRRY
+>sp|O46683|MCPT3_SHEEP Mast cell protease 3 precursor (EC 3.4.21.-) (SMCP-3) - Ovis aries (Sheep).
+MVLFLLLVALLSPAGEAGKIIGGHEAKPHSRPYMAFLQFKISGKSYICGGFLVREDFVLT
+AAHCLGSSINVTLGAHTITDQERTQQVIQVRRAIPHPDYNDETCANDIMLLQLTRKAEMT
+DAVSLINLPRSLEKVKPGMMCSVAGWGQLGVNMPSADKLQEVDLEVQREEKCIARFKDYI
+PVTQICAGDPSKRKDSFLGDSGGPLVCDGVAQGIVSYGKDDGTTPNVYTRISSFLSWIQR
+TMRQYKNQGSA
+>sp|P80219|DDN1_BOVIN Duodenase-1 (EC 3.4.21.-) (Duodenase I) (Duodenum serine protease) - Bos taurus (Bovine).
+IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLGSINVTLGAHNIME
+RERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMM
+CSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFKNYIPFTQICAGDPSKRRNSFSGD
+SGGPLVCNGVAQGIVSYGKNDGTTPDVYTRISSFLPWIKRVMYLFK
+>sp|P20718|GRAH_HUMAN Granzyme H precursor (EC 3.4.21.-) (Cytotoxic T-lymphocyte proteinase) (Cathepsin G-like 2) (CTSGL2) (CCP-X) (Cytotoxic serine protease C) (CSP-C) - Homo sapiens (Human).
+MQPFLLLLAFLLTPGAGTEEIIGGHEAKPHSRPYMAFVQFLQEKSRKRCGGILVRKDFVL
+TAAHCQGSSINVTLGAHNIKEQERTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKW
+TTAVRPLRLPSSKAQVKPGQLCSVAGWGYVSMSTLATTLQEVLLTVQKDCQCERLFHGNY
+SRATEICVGDPKKTQTGFKGDSGGPLVCKDVAQGILSYGNKKGTPPGVYIKVSHFLPWIK
+RTMKRL
+>sp|P10144|GRAB_HUMAN Granzyme B precursor (EC 3.4.21.79) (T-cell serine protease 1-3E) (Cytotoxic T-lymphocyte proteinase 2) (Lymphocyte protease) (SECT) (Granzyme-2) (Cathepsin G-like 1) (CTSGL1) (CTLA-1) (Fragmentin-2) (Human lymphocyte protein) (HLP) 
+MQPILLLLAFLLLPRADAGEIIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIQDDFVL
+TAAHCWGSSINVTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKR
+TRAVQPLRLPSNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHY
+YDSTIELCVGDPEIKKTSFKGDSGGPLVCNKVAQGIVSYGRNNGMPPRACTKVSSFVHWI
+KKTMKRY
+>sp|P04187|GRAB_MOUSE Granzyme B(G,H) precursor (EC 3.4.21.79) (Cytotoxic cell protease 1) (CCP1) (CTLA-1) (Fragmentin-2) - Mus musculus (Mouse).
+MKILLLLLTLSLASRTKAGEIIGGHEVKPHSRPYMALLSIKDQQPEAICGGFLIREDFVL
+TAAHCEGSIINVTLGAHNIKEQEKTQQVIPMVKCIPHPDYNPKTFSNDIMLLKLKSKAKR
+TRAVRPLNLPRRNVNVKPGDVCYVAGWGRMAPMGKYSNTLQEVELTVQKDRECESYFKNR
+YNKTNQICAGDPKTKRASFRGDSGGPLVCKKVAAGIVSYGYKDGSPPRAFTKVSSFLSWI
+KKTMKSS
+>sp|P18291|NKP1_RAT Natural killer cell protease 1 precursor (EC 3.4.21.-) (RNKP-1) (Fragmentin) (Granzyme B) - Rattus norvegicus (Rat).
+MKLLLLLLSFSLAPKTEAGEIIGGHEAKPHSRPYMAYLQIMDEYSGSKKCGGFLIREDFV
+LTAAHCSGSKINVTLGAHNIKEQEKMQQIIPVVKIIPHPAYNSKTISNDIMLLKLKSKAK
+RSSAVKPLNLPRRNVKVKPGDVCYVAGWGKLGPMGKYSDTLQEVELTVQEDQKCESYLKN
+YFDKANEICAGDPKIKRASFRGDSGGPLVCKKVAAGIVSYGQNDGSTPRAFTKVSTFLSW
+IKKTMKKS
+>sp|Q06605|GRZ1_RAT Granzyme-like protein 1 precursor (EC 3.4.21.-) (GLP-1) (Granzyme-like protein I) (GLP I) - Rattus norvegicus (Rat).
+MNLLLLLLTVSLAPTTEAAEIIGGHEADPHSRPYMAYLQYKNEDSRDTICGGFLIREDFV
+LTAAHCSGSKINVTLGAHNIKEQEKTQQVIPVVKIIPHPAYNAKTISNDIMLLKLKSKAK
+RTRAVKTLSLPRSNFKVKPGDVCYVAGWGKLGPMGKFPDKLQEVELTVQEDQECETYLKN
+AYDKANQICAGDPKIKCASFQGDSGGPLVCKKVAAGIVSYGRKDGSTPRAFTKVSTFLSW
+IEETMKKS
+>sp|P21812|MCPT4_MOUSE Mast cell protease 4 precursor (EC 3.4.21.-) (MMCP-4) (Serosal mast cell protease) (MSMCP) (Myonase) - Mus musculus (Mouse).
+MQALLFLMALLLPSGAGAEEIIGGVESRPHSRPYMAHLEITTERGFTATCGGFLITRQFV
+MTAAHCSGREITVTLGAHDVSKTESTQQKIKVEKQIVHPKYNFYSNLHDIMLLKLQKKAK
+ETPSVNVIPLPRPSDFIKPGKMCRAAGWGRTGVTEPTSDTLREVKLRIMDKEACKNYWHY
+DYNLQVCVGSPRKKRSAYKGDSGGPLLCAGVAHGIVSYGRGDAKPPAVFTRISSYVPWIN
+RVIKGE
+>sp|P23946|MCPT1_HUMAN Chymase precursor (EC 3.4.21.39) (Mast cell protease I) - Homo sapiens (Human).
+MLLLPLPLLLFLLCSRAEAGEIIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNF
+VLTAAHCAGRSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKA
+SLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRD
+FDHNLQLCVGNPRKTKSAFKGDSGGPLLCAGVAQGIVSYGRSDAKPPAVFTRISHYRPWI
+NQILQAN
+>sp|P43430|MCPT8_MOUSE Mast cell protease 8 precursor (EC 3.4.21.-) (MMCP-8) - Mus musculus (Mouse).
+MFLLLVLLVAALPVNAEGGEIIWGTESKPHSRPYMAYIRFNDSKSVYRCGGFLVARDIVM
+TAAHCNGKVINVTLGIHNLKKKKNTQLIPVSEAIPHESFDNETLVNDIMLLKLERKAQLN
+SAVDTIALPKSKDWVKPGQVCTVAGWGKLANCTLSDTLQEVNLEVQKGQKCRSMSQTYND
+SIQLCVGNPSENKATGKGDSGGPFVCNGVVQGIVSCRLCTGTLPRVFTRISSFMPWIRKT
+MKLLQQP
\ No newline at end of file