JWS-112 Bumping version of T-Coffee to version 11.00.8cbe486.

[jabaws.git] / binaries / src / tcoffee / example / profile2_pdb2.aln

diff --git a/binaries/src/tcoffee/example/profile2_pdb2.aln b/binaries/src/tcoffee/example/profile2_pdb2.aln
new file mode 100644 (file)
index 0000000..97de091
--- /dev/null
+++ b/binaries/src/tcoffee/example/profile2_pdb2.aln
@@ -0,0 +1,76 @@
+CLUSTAL FORMAT for T-COFFEE Version_4.40 [http://www.tcoffee.org], CPU=4.24 sec, SCORE=46, Nseq=10, Len=311 
+
+sp|P00757|KLKB4_MOUSE  M---WFLILFLALSLGGID-AAPPV---------------------QSQV----DC-ENS
+sp|Q6H321|KLK2_HORSE   M---WFLVLCLDLSLGETG-ALPPI---------------------QSRIIGGWECEKHS
+sp|Q91VE3|KLK7_MOUSE   M-GVWLLSLITVLLSLALE-TAGQ----------------------GERIIDGYKCKEGS
+sp|P07338|CTRB1_RAT    MAFLWLVSCF-ALVGATFGCGVPTI---------------QPVLTGLSRIVNGEDAIPGS
+sp|P29786|TRY3_AEDAE   M-NQFLFVSFCALLDSAKV-SAATL--------------------SSGRIVGGFQIDIAE
+sp|P35037|TRY3_ANOGA   MISNKIAILLAVLVVAVAC-AQARVAQQHRSVQALPRFLPRPKYDVGHRIVGGFEIDVSE
+sp|P00773|ELA1_RAT     MLRFLVFASLVLYGHSTQD-FPE----------------------TNARVVGGAEARRNS
+sp|Q03238|GRAM_RAT     ------LLLLLALKTLWAV-GNR----------------------FEAQIIGGREAVPHS
+sp|P20160|CAP7_HUMAN   MTRLTVLALLAGLLASSRA-GSS----------------------PLLDIVGGRKARPRQ
+sp|P80015|CAP7_PIG     -------------------------------------------------IVGGRRAQPQE
+                                                                        :         .
+
+sp|P00757|KLKB4_MOUSE  QPWHVAVYRF-N----KYQCGGVLLDRNWVLTAAHCYNDK----YQVWLGKNNFLEDE-P
+sp|Q6H321|KLK2_HORSE   KPWQVAVYHQ-G----HFQCGGVLVHPQWVLTAAHCMSDD----YQIWLGRHNLSEDE-D
+sp|Q91VE3|KLK7_MOUSE   HPWQVALLKG-N----QLHCGGVLVDKYWVLTAAHCKMGQ----YQVQLGSDKI--GD-Q
+sp|P07338|CTRB1_RAT    WPWQVSLQDKTG----FHFCGGSLISEDWVVTAAHCGVKTS---DVVVAGEFDQGSDE-E
+sp|P29786|TRY3_AEDAE   VPHQVSLQRS-G----RHFCGGSIISPRWVLTRAHCTTNTD---PAAYTIRAGSTDRT-N
+sp|P35037|TRY3_ANOGA   TPYQVSLQYF-N----SHRCGGSVLNSKWILTAAHCTVNLQ---PSSLAVRLGSSRHA-S
+sp|P00773|ELA1_RAT     WPSQISLQYL-SGGSWYHTCGGTLIRRNWVMTAAHCVSSQMT--FRVVVGDHNLSQND-G
+sp|Q03238|GRAM_RAT     RPYMVSLQNT-K----SHMCGGVLVHQKWVLTAAHCLSEPLQ-QLKLVFGLHSLHDPQ-D
+sp|P20160|CAP7_HUMAN   FPFLASIQNQ-G----RHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDLRRRERQ
+sp|P80015|CAP7_PIG     FPFLASIQKQ-G----RPFCAGALVHPRFVLTAASCFRGKNSGSASVVLGAYDLRQQE-Q
+                        *   ::            *.* ::   :::* * *                        
+
+sp|P00757|KLKB4_MOUSE  SDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEE
+sp|Q6H321|KLK2_HORSE   TAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQE
+sp|Q91VE3|KLK7_MOUSE   SAQKIKATKSFRHPGYSTKT-----------HVNDIMLVRLDEPVKMSSKVEAVQLPEHC
+sp|P07338|CTRB1_RAT    NIQVLKIAQVFKNPKFNMFT-----------VRNDITLLKLATPAQFSETVSAVCLPNVD
+sp|P29786|TRY3_AEDAE   GGIIVKVKSVIPHPQYNGDT-----------YNYDFSLLELDESIGFSRSIEAIALPDAS
+sp|P35037|TRY3_ANOGA   GGTVVRVARVLEHPNYDDST-----------IDYDFSLMELESELTFSDVVQPVSLPDQD
+sp|P00773|ELA1_RAT     TEQYVSVQKIMVHPTWNSNNVAA---------GYDIALLRLAQSVTLNNYVQLAVLPQEG
+sp|Q03238|GRAM_RAT     PGLTFYIKQAIKHPGYNLK-Y-----------ENDLALLKLDGRVKPSKNVKPLALPRKP
+sp|P20160|CAP7_HUMAN   SRQTFSIS-SMSENGYDPQQN-----------LNDLMLLQLDREANLTSSVTILPLPLQN
+sp|P80015|CAP7_PIG     SRQTFSIR-SISQNGYDPRQN-----------LNDVLLLQLDREARLTPSVALVPLPPQN
+                                 : .  :.                 *. *:.*      .  :    **   
+
+sp|P00757|KLKB4_MOUSE  PKL---GSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMK--VTDAMLCAG
+sp|Q6H321|KLK2_HORSE   PKL---GSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAYPEK--MTEFVLCAT
+sp|Q91VE3|KLK7_MOUSE   EPP---GTSCTVSGWGTTTSPDVTFPSDLMCSDVKLISSRECKKVYKDL--LGKTMLCAG
+sp|P07338|CTRB1_RAT    DDF-PPGTVCATTGWGKTKYNALKTPEKLQQAALPIVSEADCKKSWGSK--ITDVMTCAG
+sp|P29786|TRY3_AEDAE   ETV-ADGAMCTVSGWGDTKNV-FEMNTLLRAVNVPSYNQAECAAALVNVVPVTEQMICAG
+sp|P35037|TRY3_ANOGA   EAV-EDGTMTIVSGWGNTQSA-AESNAILRAANVPTVNQKECTIAYSSSGGITDRMLCAG
+sp|P00773|ELA1_RAT     TIL-ANNNPCYITGWGRTRT-NGQLSQTLQQAYLPSVDYSICSSSSYWGSTVKTTMVCAG
+sp|Q03238|GRAM_RAT     RDKPAEGSRCSTAGWGITHQ-RGQLAKSLQELDLRLLDTRMCNNSRFWNGVLTDSMLCLK
+sp|P20160|CAP7_HUMAN   ATV-EAGTRCQVAGWGSQRS-GGRLSRFPRFVNVTVTPEDQCRPNN----------VCTG
+sp|P80015|CAP7_PIG     ATV-EAGTNCQVAGWGTQRL-RRLFSRFPRVLNVTVT-SNPCLPRD----------MCIG
+                             .     :***                 :       *               *  
+
+sp|P00757|KLKB4_MOUSE  EMDGGSYTCEHDSGGPLICDG----ILQGITSW-GPEPCGEPTEPSVYTKLIKFSSWIRE
+sp|Q6H321|KLK2_HORSE   HRDDSGSICLGDSGGALICDG----VFQGITSW-GYSECADFNDNFVFTKVMPHLKWIKE
+sp|Q91VE3|KLK7_MOUSE   IPDSKTNTCNGDSGGPLVCND----TLQGLVSW-GTYPCGQPNDPGVYTQVCKYKRWVME
+sp|P07338|CTRB1_RAT    A--SGVSSCMGDSGGPLVCQKDGVWTLAGIVSW-GSGVCSTS-TPAVYSRVTALMPWVQQ
+sp|P29786|TRY3_AEDAE   YAAGGKDSCQGDSGGPLVSGD----KLVGVVSW-GK-GCALPNLPGVYARVSTVRQWIRE
+sp|P35037|TRY3_ANOGA   YKRGGKDACQGDSGGPLVVDG----KLVGVVSW-GF-GCAMPGYPGVYARVAVVRDWVRE
+sp|P00773|ELA1_RAT     -GDGVRSGCQGDSGGPLHCLVNGQYSVHGVTSFVSSMGCNVSKKPTVFTRVSAYISWMNN
+sp|Q03238|GRAM_RAT     AGAKGQAPCKGDSGGPLVC---GKGKVDGILSF-SSKNCTDIFKPTVATAVAPYSSWIRK
+sp|P20160|CAP7_HUMAN   VLTRRGGICNGDGGTPLVC---E-GLAHGVASF-SLGPCGR--GPDFFTRVALFRDWIDG
+sp|P80015|CAP7_PIG     VFSRRGRISQGDRGTPLVC---N-GLAQGVASF-LRRRFRR--SSGFFTRVALFRNWIDS
+                               .  * * .*           *: *:             . : :     *:  
+
+sp|P00757|KLKB4_MOUSE  TMANNP-----
+sp|Q6H321|KLK2_HORSE   TIEKNS-----
+sp|Q91VE3|KLK7_MOUSE   TMKTHR-----
+sp|P07338|CTRB1_RAT    ILEAN------
+sp|P29786|TRY3_AEDAE   VSEV-------
+sp|P35037|TRY3_ANOGA   NSGA-------
+sp|P00773|ELA1_RAT     VIAY------T
+sp|Q03238|GRAM_RAT     VIGRWSPQPLT
+sp|P20160|CAP7_HUMAN   VLNNPGPGP-A
+sp|P80015|CAP7_PIG     VLNNPP-----
+                                  
+
+
+