JWS-112 Bumping version of T-Coffee to version 11.00.8cbe486.

[jabaws.git] / binaries / src / tcoffee / example / profile2_pdb2.fasta

diff --git a/binaries/src/tcoffee/example/profile2_pdb2.fasta b/binaries/src/tcoffee/example/profile2_pdb2.fasta
new file mode 100644 (file)
index 0000000..ff0d794
--- /dev/null
+++ b/binaries/src/tcoffee/example/profile2_pdb2.fasta
@@ -0,0 +1,68 @@
+>sp|Q91VE3|KLK7_MOUSE   Kallikrein-7 precursor (EC 3.4.21.-) (Stratum corneum chymotryptic enzyme) (Thymopsin) - Mus musculus (Mouse).
+MGVWLLSLITVLLSLALETAGQGERIIDGYKCKEGSHPWQVALLKGNQLH
+CGGVLVDKYWVLTAAHCKMGQYQVQLGSDKIGDQSAQKIKATKSFRHPGY
+STKTHVNDIMLVRLDEPVKMSSKVEAVQLPEHCEPPGTSCTVSGWGTTTS
+PDVTFPSDLMCSDVKLISSRECKKVYKDLLGKTMLCAGIPDSKTNTCNGD
+SGGPLVCNDTLQGLVSWGTYPCGQPNDPGVYTQVCKYKRWVMETMKTHR
+>sp|Q6H321|KLK2_HORSE   Kallikrein-1E2 precursor (EC 3.4.21.35) (Glandular kallikrein) (HPK) - Equus caballus (Horse).
+MWFLVLCLDLSLGETGALPPIQSRIIGGWECEKHSKPWQVAVYHQGHFQC
+GGVLVHPQWVLTAAHCMSDDYQIWLGRHNLSEDEDTAQFHQVSDSFLDPQ
+FDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQEPKLGS
+TCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAYPEKMTEFVLCAT
+HRDDSGSICLGDSGGALICDGVFQGITSWGYSECADFNDNFVFTKVMPHL
+KWIKETIEKNS
+>sp|Q03238|GRAM_RAT     Granzyme M precursor (EC 3.4.21.-) (Met-ase) (Natural killer cell granular protease) (RNK-Met-1) (Fragment) - Rattus norvegicus (Rat).
+LLLLLALKTLWAVGNRFEAQIIGGREAVPHSRPYMVSLQNTKSHMCGGVL
+VHQKWVLTAAHCLSEPLQQLKLVFGLHSLHDPQDPGLTFYIKQAIKHPGY
+NLKYENDLALLKLDGRVKPSKNVKPLALPRKPRDKPAEGSRCSTAGWGIT
+HQRGQLAKSLQELDLRLLDTRMCNNSRFWNGVLTDSMLCLKAGAKGQAPC
+KGDSGGPLVCGKGKVDGILSFSSKNCTDIFKPTVATAVAPYSSWIRKVIG
+RWSPQPLT
+>sp|P20160|CAP7_HUMAN   Azurocidin precursor (Cationic antimicrobial protein CAP37) (Heparin- binding protein) (HBP) - Homo sapiens (Human).
+MTRLTVLALLAGLLASSRAGSSPLLDIVGGRKARPRQFPFLASIQNQGRH
+FCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSIS
+SMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQ
+VAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPNNVCTGVLTRRGGICNGD
+GGTPLVCEGLAHGVASFSLGPCGRGPDFFTRVALFRDWIDGVLNNPGPGP
+A
+>sp|P07338|CTRB1_RAT    Chymotrypsinogen B precursor (EC 3.4.21.1) [Contains: Chymotrypsin B chain A; Chymotrypsin B chain B; Chymotrypsin B chain C] - Rattus norvegicus (Rat).
+MAFLWLVSCFALVGATFGCGVPTIQPVLTGLSRIVNGEDAIPGSWPWQVS
+LQDKTGFHFCGGSLISEDWVVTAAHCGVKTSDVVVAGEFDQGSDEENIQV
+LKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAVCLPNVDDDFPP
+GTVCATTGWGKTKYNALKTPEKLQQAALPIVSEADCKKSWGSKITDVMTC
+AGASGVSSCMGDSGGPLVCQKDGVWTLAGIVSWGSGVCSTSTPAVYSRVT
+ALMPWVQQILEAN
+>sp|P00757|KLKB4_MOUSE  Kallikrein 1-related peptidase-like b4 precursor (7S nerve growth factor alpha chain) (Alpha-NGF) - Mus musculus (Mouse).
+MWFLILFLALSLGGIDAAPPVQSQVDCENSQPWHVAVYRFNKYQCGGVLL
+DRNWVLTAAHCYNDKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSL
+LNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLAS
+GWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGG
+SYTCEHDSGGPLICDGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRE
+TMANNP
+>sp|P80015|CAP7_PIG     Azurocidin (Cationic antimicrobial protein CAP37) (Heparin-binding protein) (HBP) - Sus scrofa (Pig).
+IVGGRRAQPQEFPFLASIQKQGRPFCAGALVHPRFVLTAASCFRGKNSGS
+ASVVLGAYDLRQQEQSRQTFSIRSISQNGYDPRQNLNDVLLLQLDREARL
+TPSVALVPLPPQNATVEAGTNCQVAGWGTQRLRRLFSRFPRVLNVTVTSN
+PCLPRDMCIGVFSRRGRISQGDRGTPLVCNGLAQGVASFLRRRFRRSSGF
+FTRVALFRNWIDSVLNNPP
+>sp|P29786|TRY3_AEDAE   Trypsin 3A1 precursor (EC 3.4.21.4) - Aedes aegypti (Yellowfever mosquito).
+MNQFLFVSFCALLDSAKVSAATLSSGRIVGGFQIDIAEVPHQVSLQRSGR
+HFCGGSIISPRWVLTRAHCTTNTDPAAYTIRAGSTDRTNGGIIVKVKSVI
+PHPQYNGDTYNYDFSLLELDESIGFSRSIEAIALPDASETVADGAMCTVS
+GWGDTKNVFEMNTLLRAVNVPSYNQAECAAALVNVVPVTEQMICAGYAAG
+GKDSCQGDSGGPLVSGDKLVGVVSWGKGCALPNLPGVYARVSTVRQWIRE
+VSEV
+>sp|P35037|TRY3_ANOGA   Trypsin-3 precursor (EC 3.4.21.4) - Anopheles gambiae (African malaria mosquito).
+MISNKIAILLAVLVVAVACAQARVAQQHRSVQALPRFLPRPKYDVGHRIV
+GGFEIDVSETPYQVSLQYFNSHRCGGSVLNSKWILTAAHCTVNLQPSSLA
+VRLGSSRHASGGTVVRVARVLEHPNYDDSTIDYDFSLMELESELTFSDVV
+QPVSLPDQDEAVEDGTMTIVSGWGNTQSAAESNAILRAANVPTVNQKECT
+IAYSSSGGITDRMLCAGYKRGGKDACQGDSGGPLVVDGKLVGVVSWGFGC
+AMPGYPGVYARVAVVRDWVRENSGA
+>sp|P00773|ELA1_RAT     Elastase-1 precursor (EC 3.4.21.36) - Rattus norvegicus (Rat).
+MLRFLVFASLVLYGHSTQDFPETNARVVGGAEARRNSWPSQISLQYLSGG
+SWYHTCGGTLIRRNWVMTAAHCVSSQMTFRVVVGDHNLSQNDGTEQYVSV
+QKIMVHPTWNSNNVAAGYDIALLRLAQSVTLNNYVQLAVLPQEGTILANN
+NPCYITGWGRTRTNGQLSQTLQQAYLPSVDYSICSSSSYWGSTVKTTMVC
+AGGDGVRSGCQGDSGGPLHCLVNGQYSVHGVTSFVSSMGCNVSKKPTVFT
+RVSAYISWMNNVIAYT