JWS-112 Bumping version of T-Coffee to version 11.00.8cbe486.

[jabaws.git] / binaries / src / tcoffee / example / sample_aln2.fasta

diff --git a/binaries/src/tcoffee/example/sample_aln2.fasta b/binaries/src/tcoffee/example/sample_aln2.fasta
new file mode 100644 (file)
index 0000000..b367bd3
--- /dev/null
+++ b/binaries/src/tcoffee/example/sample_aln2.fasta
@@ -0,0 +1,36 @@
+CLUSTAL FORMAT for T-COFFEE Version_2.37, CPU=0.09 sec, SCORE=0, Nseq=6, Len=184
+
+1cms            --GEVASVPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCK
+4pep            ----IGDEPLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS
+4ape            -STGSATTTPIDSLDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETT
+3app            AASGVATNTPTAN-DEEYITPVTIG--GTTLNLNFDTGSADLWVFSTELP
+2apr            AGVGTVPMTDYGN-DIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCT
+1cms_1          -----------------YTGSLHWVPVTVQQYWQFTVDS---VTISGVVV
+                                 *   :            * ..*      *    
+
+1cms            SNACKNHQRFDPR-KSSTFQNLGKPLSIHYGTG-SMQGILGYDTVTVSNI
+4pep            SLACSDHNQFNPD-DSSTFEATSQELSITYGTG-SMTGILGYDTVQVGGI
+4ape            ASEVDGQTIYTPSKSTTAKLLSGATWSISYGDGSSSSGDVYTDTVSVGGL
+3app            ASQQSGHSVYNP--SATGKELSGYTWSISYGDGSSASGNVFTDSVTVGGV
+2apr            NCG-SGQTKYDPN-QSSTYQADGRTWSISYGDGSSASGILAKDNVNLGGL
+1cms_1          ACEGGCQAILDTG-TSKLVGPSSDILNIQQAIG-ATQNQYGEFDIDCDNL
+                      :    .   :.     .   .*  . * :  .      :  ..:
+
+1cms            VDIQQTVGLSTQEPGDVFTYAEFDGILGMAYPSLASEY---SIPVFDNMM
+4pep            SDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASG---ATPVFDNLW
+4ape            TVTGQAVESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFFDNAK
+3app            TAHGQAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQSQTTFFDTVK
+2apr            LIKGQTIELAKREAASFASGPN-DGLLGLGFDTITTVR--GVKTPMDNLI
+1cms_1          SYMPTVVFEINGKMYPLTPSAYTSQDQGFCTSGFQSEN------HSQKWI
+                      .         .   .  .   *:    : :          :.  
+
+1cms            NRHLVAQDLFSVYMDRNGQE--SMLTLGAIDPSY
+4pep            DQGLVSQDLFSVYLSSNDDSG-SVVLLGGIDSSY
+4ape            AS--LDSPVFTADLGYHAPG---TYNFGFIDTTA
+3app            SS--LAQPLFAVALKHQQPG---VYDFGFIDSSK
+2apr            SQGLISRPIFGVYLGKAKNGGGGEYIFGGYDSTK
+1cms_1          LGDVFIREYYSVFDRANNLVG----LAKAI----
+                    .    : .                      
+
+
+