JWS-112 Bumping version of T-Coffee to version 11.00.8cbe486.

[jabaws.git] / binaries / src / tcoffee / example / sample_aln2.msf

diff --git a/binaries/src/tcoffee/example/sample_aln2.msf b/binaries/src/tcoffee/example/sample_aln2.msf
new file mode 100644 (file)
index 0000000..dbd42c3
--- /dev/null
+++ b/binaries/src/tcoffee/example/sample_aln2.msf
@@ -0,0 +1,48 @@
+PileUp
+
+
+
+   MSF:  184  Type: P    Check:  9231   .. 
+
+ Name: 1cms oo  Len:  184  Check:  5502  Weight:  1.000
+ Name: 4pep oo  Len:  184  Check:  5357  Weight:  1.000
+ Name: 4ape oo  Len:  184  Check:  4513  Weight:  1.000
+ Name: 3app oo  Len:  184  Check:  1567  Weight:  1.000
+ Name: 2apr oo  Len:  184  Check:  9231  Weight:  1.000
+ Name: 1cms_1 oo  Len:  184  Check:  3061  Weight:  1.000
+
+//
+
+
+
+1cms        ..GEVASVPL TNYLDSQYFG KIYLGTPPQE FTVLFDTGSS DFWVPSIYCK 
+4pep        ....IGDEPL ENYLDTEYFG TIGIGTPAQD FTVIFDTGSS NLWVPSVYCS 
+4ape        .STGSATTTP IDSLDDAYIT PVQIGTPAQT LNLDFDTGSS DLWVFSSETT 
+3app        AASGVATNTP TAN.DEEYIT PVTIG..GTT LNLNFDTGSA DLWVFSTELP 
+2apr        AGVGTVPMTD YGN.DIEYYG QVTIGTPGKK FNLDFDTGSS DLWIASTLCT 
+1cms_1      .......... .......YTG SLHWVPVTVQ QYWQFTVDS. ..VTISGVVV 
+
+
+1cms        SNACKNHQRF DPR.KSSTFQ NLGKPLSIHY GTG.SMQGIL GYDTVTVSNI 
+4pep        SLACSDHNQF NPD.DSSTFE ATSQELSITY GTG.SMTGIL GYDTVQVGGI 
+4ape        ASEVDGQTIY TPSKSTTAKL LSGATWSISY GDGSSSSGDV YTDTVSVGGL 
+3app        ASQQSGHSVY NP..SATGKE LSGYTWSISY GDGSSASGNV FTDSVTVGGV 
+2apr        NCG.SGQTKY DPN.QSSTYQ ADGRTWSISY GDGSSASGIL AKDNVNLGGL 
+1cms_1      ACEGGCQAIL DTG.TSKLVG PSSDILNIQQ AIG.ATQNQY GEFDIDCDNL 
+
+
+1cms        VDIQQTVGLS TQEPGDVFTY AEFDGILGMA YPSLASEY.. .SIPVFDNMM 
+4pep        SDTNQIFGLS ETEPGSFLYY APFDGILGLA YPSISASG.. .ATPVFDNLW 
+4ape        TVTGQAVESA KKVSSSFTED STIDGLLGLA FSTLNTVSPT QQKTFFDNAK 
+3app        TAHGQAVQAA QQISAQFQQD TNNDGLLGLA FSSINTVQPQ SQTTFFDTVK 
+2apr        LIKGQTIELA KREAASFASG PN.DGLLGLG FDTITTVR.. GVKTPMDNLI 
+1cms_1      SYMPTVVFEI NGKMYPLTPS AYTSQDQGFC TSGFQSEN.. ....HSQKWI 
+
+
+1cms        NRHLVAQDLF SVYMDRNGQE ..SMLTLGAI DPSY
+4pep        DQGLVSQDLF SVYLSSNDDS G.SVVLLGGI DSSY
+4ape        AS..LDSPVF TADLGYHAPG ...TYNFGFI DTTA
+3app        SS..LAQPLF AVALKHQQPG ...VYDFGFI DSSK
+2apr        SQGLISRPIF GVYLGKAKNG GGGEYIFGGY DSTK
+1cms_1      LGDVFIREYY SVFDRANNLV G....LAKAI ....
+