JWS-112 Bumping version of T-Coffee to version 11.00.8cbe486.

[jabaws.git] / binaries / src / tcoffee / example / sample_profile1.aln

diff --git a/binaries/src/tcoffee/example/sample_profile1.aln b/binaries/src/tcoffee/example/sample_profile1.aln
new file mode 100644 (file)
index 0000000..3142525
--- /dev/null
+++ b/binaries/src/tcoffee/example/sample_profile1.aln
@@ -0,0 +1,24 @@
+CLUSTAL FORMAT for T-COFFEE Version_2.36, CPU=0.69 sec, SCORE=54, Nseq=3, Len=183
+
+sequence1       -STGSATTTPIDS-LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSET
+sequence2       AASGVATNTPTAN--DEEYITPVTIG--GTTLNLNFDTGSADLWVFSTEL
+1cms            ---GEVASVPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYC
+                   * .:..*  .  *. *:  : :*     :.: *****:*:** *   
+
+sequence1       TASEVDGQTIYTPSKSTTAKLLSGATWSISYGDGSSSSGDVYTDTVSVGG
+sequence2       PASQQSGHSVYNP--SATGKELSGYTWSISYGDGSSASGNVFTDSVTVGG
+1cms            KSNACKNHQRFDPRKSSTFQNL-GKPLSIHYGTGSMQ-GILGYDTVTVSN
+                 :.  ..:  : *  *:* : * * . ** ** **   * :  *:*:*..
+
+sequence1       LTVTGQAVESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFFDNA
+sequence2       VTAHGQAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQSQTTFFDTV
+1cms            IVDIQQTVGLSTQEPGDVFTYAEFDGILGMAYPSLAS---EYSIPVFDNM
+                :.   *:*  : : ....   :  **:**:*:.:: :     . ..**. 
+
+sequence1       --KASLDSPVFTADL-GYHAPGTYNFGFIDTTA
+sequence2       --KSSLAQPLFAVAL-KHQQPGVYDFGFIDSSK
+1cms            MNRHLVAQDLFSVYMDRNGQESMLTLGAIDPSY
+                  :  : . :*:. :      .   :* **.: 
+
+
+