JWS-112 Bumping version of T-Coffee to version 11.00.8cbe486.

[jabaws.git] / binaries / src / tcoffee / example / sample_rnaseq2.cons.stk

diff --git a/binaries/src/tcoffee/example/sample_rnaseq2.cons.stk b/binaries/src/tcoffee/example/sample_rnaseq2.cons.stk
new file mode 100644 (file)
index 0000000..20da5db
--- /dev/null
+++ b/binaries/src/tcoffee/example/sample_rnaseq2.cons.stk
@@ -0,0 +1,51 @@
+# STOCKHOLM 1.0
+
+cons            ................gaggugcucugagacccgaaacuagacucgacuu
+#=GC SS_cons    ................(((.......................))).....
+
+cons            uaacagacacagacgacccugaa.....g.....................
+#=GC SS_cons    ..((((.....((((((.................................
+
+cons            ..auggaaa.guuuucuuccaaauugugc.....ugcacguuuu.....u
+#=GC SS_cons    ....((((....)))).((((...(((((......)))))..........
+
+cons            ggcgag.agcauggggcugugcggcguccc...cucccuggcgc.....c
+#=GC SS_cons    .((.....))...(((((((((((((((...........))))).....)
+
+cons            caccugugcccugcacacu.g.gccugcacuguggugau.....cuc.gc
+#=GC SS_cons    ((((.((((...((........))..))))...)))).............
+
+cons            uuggccc....ccaccuga.......uucc....ugaca....uacagca
+#=GC SS_cons    ...............................................)))
+
+cons            ga..ggaac....c..uuaggcucaggugg..aaca.....gccucaacu
+#=GC SS_cons    ....(((((.......(((((..(.(((.............)))((....
+
+cons            ...gauuc.gucccugaacuuccguaca..cagcccuggagucgucu...
+#=GC SS_cons    ...))....)..))))).))))).......))))))))))))))))....
+
+cons            .uaga.............................................
+#=GC SS_cons    ............((((((((........((((...........))))...
+
+cons            ..................................................
+#=GC SS_cons    .........((((((((((((...............))).)).....)))
+
+cons            ..................................................
+#=GC SS_cons    ))))..)))))))).....))))...........................
+
+cons            ..................................................
+#=GC SS_cons    ((((((((((((((((.....)))))))))...))))))).....(((((
+
+cons            ..................................c...............
+#=GC SS_cons    .(((((((((((..((.........((((((.((((.(....((......
+
+cons            ...g..c....ugc........gc...g.ug..c.cc.............
+#=GC SS_cons    ...((.((.(((((........)))).).)).)).........))....)
+
+cons            ....c.gc..c.u.cuc.c.cca.aa.c.ug..gca...u...gg.a...
+#=GC SS_cons    )))).)))))).........))....)))))))))))......)))))..
+
+cons            .......cca.c...................................
+#=GC SS_cons    ...............................................
+
+//